Basic Information

Insect: Synanthedon andrenaeformis
Gene Symbol: -
Assembly: GCA_936447275.2
Location: CAKZFQ020002099.1:13045-27435[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.4e-06 8.8e-05 23.1 6.0 2 23 83 104 82 104 0.98

2 16 0.91 57 4.8 1.5 1 23 107 130 107 130 0.96

3 16 0.00022 0.014 16.2 3.1 1 23 161 183 161 183 0.95

4 16 6.5e-08 4.1e-06 27.3 0.8 1 23 189 211 189 211 0.98

5 16 4.2e-06 0.00026 21.6 1.7 1 23 217 240 217 240 0.96

6 16 0.0028 0.17 12.8 0.5 1 23 246 268 246 268 0.97

7 16 1.1e-07 7.1e-06 26.6 1.7 1 23 274 296 274 296 0.98

8 16 0.00012 0.0077 17.0 1.4 2 23 329 351 328 351 0.94

9 16 2.9e-06 0.00018 22.1 5.1 2 23 392 413 391 413 0.98

10 16 0.91 57 4.8 1.5 1 23 416 439 416 439 0.96

11 16 0.00022 0.014 16.2 3.1 1 23 470 492 470 492 0.95

12 16 6.5e-08 4.1e-06 27.3 0.8 1 23 498 520 498 520 0.98

13 16 2.3e-06 0.00014 22.5 1.0 1 23 526 549 526 549 0.96

14 16 0.046 2.9 8.9 4.2 1 23 555 577 555 577 0.97

15 16 1.6e-06 0.0001 22.9 2.1 1 23 583 605 583 605 0.98

16 16 0.00013 0.008 17.0 1.4 2 23 638 660 637 660 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.4e-06	8.8e-05	23.1	6.0	2	23	83	104	82	104	0.98
2	16	0.91	57	4.8	1.5	1	23	107	130	107	130	0.96
3	16	0.00022	0.014	16.2	3.1	1	23	161	183	161	183	0.95
4	16	6.5e-08	4.1e-06	27.3	0.8	1	23	189	211	189	211	0.98
5	16	4.2e-06	0.00026	21.6	1.7	1	23	217	240	217	240	0.96
6	16	0.0028	0.17	12.8	0.5	1	23	246	268	246	268	0.97
7	16	1.1e-07	7.1e-06	26.6	1.7	1	23	274	296	274	296	0.98
8	16	0.00012	0.0077	17.0	1.4	2	23	329	351	328	351	0.94
9	16	2.9e-06	0.00018	22.1	5.1	2	23	392	413	391	413	0.98
10	16	0.91	57	4.8	1.5	1	23	416	439	416	439	0.96
11	16	0.00022	0.014	16.2	3.1	1	23	470	492	470	492	0.95
12	16	6.5e-08	4.1e-06	27.3	0.8	1	23	498	520	498	520	0.98
13	16	2.3e-06	0.00014	22.5	1.0	1	23	526	549	526	549	0.96
14	16	0.046	2.9	8.9	4.2	1	23	555	577	555	577	0.97
15	16	1.6e-06	0.0001	22.9	2.1	1	23	583	605	583	605	0.98
16	16	0.00013	0.008	17.0	1.4	2	23	638	660	637	660	0.94

Sequence Information

Coding Sequence: ATGGGTTTCTACTCGGGGGCTTTTATTAGAGGGTTTTGGCAAGATTTAAATTGGGTTGTGCCCAAATATCTACTCGATTTATTGGTCAACTCGCGGCCGAGCGAGATTCCGTGTACACGGCATGCTTACCAATTTCTTTTGGTGTTTATTGGAGTTTACTCCTTAAGAATCGATTTTCTTATGGGAATAAAATCAAAGCTGTCACACGGTGACAGTTTAAGAAACATAAGCGACATAGACGAGAACAAATGCAACATTTGCAATAAAACTTTCAAACACAAGGGGCACTTGGAGAATCACGTCAGAACTCACGAAGGCTATACATGTGAAATATGTCTGGAAATATTGTCGAATAAGAGAGAGCACTCAAATCATATTAAGTCGAAGCACGTTGTCGACGGGAAATATTGCTGTATCGACTGCGATGCGACTTTTTTGGAAGTGAAAAAGCTAAAATGTCACATAAAGACGCACTTTATACATCCCTGTGAAATGTGCAATAAGGTTTATAAGAGCAAACATGGTTTGCGCAATCACGAAAAGGCGCATAAGGATGAGGGAGAGTTTGTGTGCCCAATGTGTAATCGTCGGTTTACAGAGAGCGAAAATTTGAAGGCTCACATGAGAAAACACACGGGCGGAAAACTGTACGAATGCCAAGAGTGCGAAAGGAAATTCACAACAAAGAGAAATTTGGTGAGACATCGTCAAAATATACACATGGATGTGAAAAAGTACAGTTGCCAGTATTGCGACAAGGGATTCATGATGAAGTTTAGGTTGGTCGCACACGAAATGATACACACGGGTGTAAAACCGTACGAGTGCGATAAATGTGAAAAATCGTTTACAAGGAAAGAGAATTTGGTGAGGCATTATAAAGTGCACGAGAGACCTAAGCCTGACAAATGTAGCATGCGTGAAAATATATTAGAAAGAAAAGAAAATTTAAATAGACAGATGCTTATTCATGCTGACATAAAAGTGTGTGAGATTTGCAAGATGACATTTAAGTACATGCACAATCTACGCCAGCACATGTTAGCTGTACATTTGGGCTTTAAGTCAAAGCAAACAGCAAGTGTCATCGAGGGCGACATGTGTGCCAACACCGCACTTTATTGGGACAGCGGTGGTGACAGTTTAAGGAACATAAGCGACATAGACGAGAACAAATGCAACATTTGCAATAAAATTTTCAAACACAAGGGGCACTTGGAGAATCACGTCAGAACTCACGAAGGCTATACATGTGAAATATGTCTGGAAATATTGTCGAATAAGAGAGAGCACTCAAATCATATTAAGTCGAAGCACGTTGTCGATGGGAAATATTGCTGTATCGACTGCGATGCGACTTTTTTGGAAGTGAAAAAGCTAAAATGTCACATAAAGACGCACTTTATACATCCCTGTGAAATGTGCAATAAGGTTTATAAGAGCAAACATGGTTTGCGCAATCACGAAAAGGCGCATAAGGATGAGGGAGAGTTTGTGTGCCCAATGTGTAATCGTCGGTTTACAGAGAGCGAAAATTTGAAGGCTCACATGAGAAAACACACGGGCGGAAAACTGTACGAATGCCAAGAGTGCGAAAGGAAATTCACCACAAAGGGAAACTTGGTTAGACATCGTCAAAATATACACGTGGATGTGAAAAAGTACAGTTGCCAGTATTGCCACGAGGGATTTACGATGAAATGTAGACTGGTCACACACGAAATGATACACACGGGTGTGAAACCGTACGAGTGCGATAAATGTAAAAAATCGTTTACAAGGAAAGAGAATTTGGTGACACATAATAAGGTGCACGAGAGACCTAAGCCTGACAAATGTAGCATGCGTGAAAATAGATTAGAAAGAAGAAAAACGTTAAATATACGGATATTCACTCAAGCTGACAGAAAAGTGTGTGACATTTGCAAGATGACATTTAAGTACATGCACAATCTACGCCAGCACATGCTGGCTGTACATTTGGGCTTTAAGTCAAAGCAAACAGCAAGTGTCATCGAGGGCGACATGTGTAAGGAGACATGCAAACGCTCACTAAGTGCGACATATGCAAGACGTTAA
Protein Sequence: MGFYSGAFIRGFWQDLNWVVPKYLLDLLVNSRPSEIPCTRHAYQFLLVFIGVYSLRIDFLMGIKSKLSHGDSLRNISDIDENKCNICNKTFKHKGHLENHVRTHEGYTCEICLEILSNKREHSNHIKSKHVVDGKYCCIDCDATFLEVKKLKCHIKTHFIHPCEMCNKVYKSKHGLRNHEKAHKDEGEFVCPMCNRRFTESENLKAHMRKHTGGKLYECQECERKFTTKRNLVRHRQNIHMDVKKYSCQYCDKGFMMKFRLVAHEMIHTGVKPYECDKCEKSFTRKENLVRHYKVHERPKPDKCSMRENILERKENLNRQMLIHADIKVCEICKMTFKYMHNLRQHMLAVHLGFKSKQTASVIEGDMCANTALYWDSGGDSLRNISDIDENKCNICNKIFKHKGHLENHVRTHEGYTCEICLEILSNKREHSNHIKSKHVVDGKYCCIDCDATFLEVKKLKCHIKTHFIHPCEMCNKVYKSKHGLRNHEKAHKDEGEFVCPMCNRRFTESENLKAHMRKHTGGKLYECQECERKFTTKGNLVRHRQNIHVDVKKYSCQYCHEGFTMKCRLVTHEMIHTGVKPYECDKCKKSFTRKENLVTHNKVHERPKPDKCSMRENRLERRKTLNIRIFTQADRKVCDICKMTFKYMHNLRQHMLAVHLGFKSKQTASVIEGDMCKETCKRSLSATYARR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -