Basic Information

Insect: Synanthedon andrenaeformis
Gene Symbol: -
Assembly: GCA_936447275.2
Location: CAKZFQ020000377.1:53422-56009[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.4e-06 0.00015 22.4 3.2 2 23 171 192 170 192 0.98

2 14 0.00076 0.047 14.5 0.9 1 23 195 217 195 217 0.97

3 14 2.7e-05 0.0017 19.1 1.1 1 23 223 245 223 245 0.99

4 14 0.0031 0.19 12.6 1.1 5 23 252 271 250 271 0.92

5 14 0.0011 0.066 14.1 0.4 1 23 280 302 280 302 0.98

6 14 2.4e-05 0.0015 19.2 1.0 1 23 308 330 308 330 0.97

7 14 2.7e-05 0.0017 19.1 0.7 2 23 363 385 362 385 0.93

8 14 7.4e-06 0.00046 20.9 1.0 1 23 390 413 390 413 0.95

9 14 1.1e-06 6.9e-05 23.5 1.4 2 23 421 443 420 443 0.97

10 14 3.1e-05 0.0019 18.9 3.2 2 23 452 474 451 474 0.96

11 14 4.8e-07 3e-05 24.6 2.1 2 23 482 504 481 504 0.97

12 14 1.6e-05 0.001 19.8 1.4 2 23 511 533 510 533 0.97

13 14 1.9e-05 0.0012 19.6 2.4 2 23 544 566 543 566 0.93

14 14 0.00075 0.047 14.5 0.9 2 23 573 595 572 595 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.4e-06	0.00015	22.4	3.2	2	23	171	192	170	192	0.98
2	14	0.00076	0.047	14.5	0.9	1	23	195	217	195	217	0.97
3	14	2.7e-05	0.0017	19.1	1.1	1	23	223	245	223	245	0.99
4	14	0.0031	0.19	12.6	1.1	5	23	252	271	250	271	0.92
5	14	0.0011	0.066	14.1	0.4	1	23	280	302	280	302	0.98
6	14	2.4e-05	0.0015	19.2	1.0	1	23	308	330	308	330	0.97
7	14	2.7e-05	0.0017	19.1	0.7	2	23	363	385	362	385	0.93
8	14	7.4e-06	0.00046	20.9	1.0	1	23	390	413	390	413	0.95
9	14	1.1e-06	6.9e-05	23.5	1.4	2	23	421	443	420	443	0.97
10	14	3.1e-05	0.0019	18.9	3.2	2	23	452	474	451	474	0.96
11	14	4.8e-07	3e-05	24.6	2.1	2	23	482	504	481	504	0.97
12	14	1.6e-05	0.001	19.8	1.4	2	23	511	533	510	533	0.97
13	14	1.9e-05	0.0012	19.6	2.4	2	23	544	566	543	566	0.93
14	14	0.00075	0.047	14.5	0.9	2	23	573	595	572	595	0.94

Sequence Information

Coding Sequence: ATGGCTGCAACATTAAAGCAAACACCGTTATGCAGATGTTGTCACAAGTATGGTGTATTCAAGAGTCTATTTTCCGACTATACCTACAACGAGAATGAGGTTGAAAATTATTCTCAGATGTTGCACGCTACATTCGGAATCTCATTTGAACCCTCGGAACGTGACAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACGAATCTCAACGGACTTGAAGAATGCCTGTGGGAAAATTATTAAACAGGAGCCATTAATTGAAAACGATGTCCCAATTAAAATAGAAAAAGTTTGGATTTATGCTTGCAGCGATAAAGAAGTACCGTTGATTAAAGTCGACGTAAAAGTTGAAAAGGAAGAGCCTCCCACTCACAACGATGAAGACAATCACTCAGATGTAAATGTGGTTTTAGACAAAGTATCCAATCAAGATGGCAGAATTGAAGGGAGCCGAAACGAATTAGATGAAAACTTAATTGAATCTGAGAACAACAGACACGAGAATAAATGCAATATTTGCAATAAAACTTTTAAATTAAAAAAGTACTTAGAAAGTCACATGAAGACGCACTTTAGACATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCTTAGGCACGAAATGGTGCACAAGGATGAGAGAAAGTTTAAGTGCTCGATATGTAATAATAGGTTTACACTGAGCAGAAGTTTGATGGCTCACATGGAAACACACAAGGATGAAACACCACAGGAGTGCGGCCGGAAATTCAAAGTCAAGAAAAGCTTATTGAGGCATCATCAAAACATGCACATTGGTGCATGTTTTGATGACAAGTACAGTTGCCAGTATTGTGATAAAGGATTTATGATGAAAGGTAGATTGGTTGCACATGAAATGAAACACACGGGTATAAAACAATACGAATGCGAAAAATGCAATAAATCGTTTAGAAGCAAAGATGTTTTGGTAAGTCATAATAAAGTGCATGAGAAACATGAGCCTAACAATCGTAACCTGCGTGAAAATAGATTCAAAAGAAGAAAAAATTTCAATAGACAATTGTTGACGCATGCTGGGATAATAGAGTGCGACATTTGCAGAAAGACCTTTAAATACAGACAGAGTTTAAGCAAGCACATGTCGGCTGTACATTTGGGCTTTGAGTTTAAGTGCGACATATGCAAGAAGATATTTAAATACAAGCAAGGTCTACGCAGCCACATGTTGGCTGAACATTTTGGCCTTAAGCCACCCACTCAGTGCGACATATGCAAGAAGACATTTAAATCCAAGGATAATATACGCCAGCACATGTTGACTGTACATTTGGGCTTTAAGCCAACGCCCATTAAGTGCAACATTTGCAAGAACACATTTAAATACAAACATAATTTAAGCAAGCACATGTCTGTTGTACATTTGGGCCTTTTGCCACCCACTCAGTGCGAAATTTGCAAAAAGACATTTAAATATAAACAGAGTTTAACCAGGCACATGTTGACTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAGGAAGACATTTAAATCCAAAGAGACTATACGCCAACACATGTTGACTGTACATTTGAGCTTTAAACTAACGCTCACTACCACTGAGTGCGAAATTTGCAGGAAGACATTTAAATATAAACACAGTTTAAGCAGGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAATCCAAGGAGACTATACGCAAGCACATGTCCGCTGTACATTTGGGCTTGAAGCGAACACGCACTAAAAGAAAAATTATTTAA
Protein Sequence: MAATLKQTPLCRCCHKYGVFKSLFSDYTYNENEVENYSQMLHATFGISFEPSERDKIYTICDECIEKLRISTDLKNACGKIIKQEPLIENDVPIKIEKVWIYACSDKEVPLIKVDVKVEKEEPPTHNDEDNHSDVNVVLDKVSNQDGRIEGSRNELDENLIESENNRHENKCNICNKTFKLKKYLESHMKTHFRHRCEVCNRDYQSKGELLRHEMVHKDERKFKCSICNNRFTLSRSLMAHMETHKDETPQECGRKFKVKKSLLRHHQNMHIGACFDDKYSCQYCDKGFMMKGRLVAHEMKHTGIKQYECEKCNKSFRSKDVLVSHNKVHEKHEPNNRNLRENRFKRRKNFNRQLLTHAGIIECDICRKTFKYRQSLSKHMSAVHLGFEFKCDICKKIFKYKQGLRSHMLAEHFGLKPPTQCDICKKTFKSKDNIRQHMLTVHLGFKPTPIKCNICKNTFKYKHNLSKHMSVVHLGLLPPTQCEICKKTFKYKQSLTRHMLTVHSDLPPTQCDICRKTFKSKETIRQHMLTVHLSFKLTLTTTECEICRKTFKYKHSLSRHMSAVHSDLPPTQCDICMKTFKSKETIRKHMSAVHLGLKRTRTKRKII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -