Sand002638.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000139.1:501190-509561[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0074 0.46 11.4 0.6 3 23 84 105 83 105 0.96 2 23 0.047 2.9 8.9 0.3 1 21 476 496 476 497 0.96 3 23 5.3 3.3e+02 2.4 0.3 1 22 539 560 539 562 0.82 4 23 0.0045 0.28 12.1 0.5 3 21 573 591 571 592 0.95 5 23 1.2 72 4.5 0.0 3 23 601 622 599 622 0.88 6 23 0.014 0.87 10.6 0.2 3 23 643 664 641 664 0.96 7 23 0.0015 0.094 13.6 2.5 1 23 670 693 670 693 0.95 8 23 0.1 6.2 7.9 0.0 1 23 719 742 719 742 0.90 9 23 0.015 0.93 10.5 3.4 1 23 747 769 747 769 0.97 10 23 0.0069 0.43 11.5 0.2 1 23 775 798 775 798 0.95 11 23 0.0018 0.11 13.3 1.3 1 23 811 833 811 833 0.97 12 23 0.00014 0.0088 16.8 1.8 1 23 882 905 882 905 0.97 13 23 0.00097 0.06 14.2 1.0 1 23 965 988 965 988 0.96 14 23 0.00074 0.046 14.6 2.0 2 23 1011 1033 1010 1033 0.95 15 23 0.022 1.4 9.9 0.1 2 23 1039 1061 1038 1061 0.94 16 23 0.01 0.63 11.0 0.2 1 21 1106 1126 1106 1127 0.95 17 23 0.00098 0.061 14.2 0.6 1 23 1137 1159 1137 1159 0.93 18 23 7e-05 0.0044 17.8 0.3 2 23 1250 1272 1250 1272 0.93 19 23 2.6e-07 1.6e-05 25.4 1.4 3 23 1279 1299 1278 1299 0.98 20 23 0.0054 0.34 11.8 0.4 1 23 1318 1340 1318 1341 0.95 21 23 0.031 2 9.4 0.0 1 23 1362 1384 1362 1384 0.98 22 23 0.01 0.65 10.9 1.0 1 23 1390 1413 1390 1413 0.95 23 23 0.00025 0.016 16.1 0.7 1 23 1421 1444 1421 1444 0.96
Sequence Information
- Coding Sequence
- ATGAACATAGACTCATTCAAGGCAAAAGGCAGTTCGCCAAGCATCTTTAATTTATATGGTTATCTCATAACTTTACAGGGTGCAGAGAGTGAAAAAGAAGAAGAAGAAGAAGAGGATGAAGAGATGAACGAAGCTGGTGACCAGTACCCCGCTGTCGCGAACATGCCTGAGGTATCGATAACAGTGATGCGACCCACCGGAGAGACCTTACAGTCTCGACAGGGAATACAACAGCTCGCATCTAAAGATTGTCTTGTATGTGGACGAGCGTACAGATACTCCCATAATGCTAGACGACACGAGTTGACTGCCCACAGTTTTGATAGGTATACAAACAAAATTAAACCAAAAAAAGAAAATCCACATGTAATGCTACCAAAACTTAGACCGAATCCATTTAATCCTAAAGCGCGAATGATGCCCAACCCCATTAGCCACAAAATGCAATTTATGCCCAAGAATGTACCTATTAAACAAATGCCAAGAGTTGTTATCCCACCGAAACCTGTACCTATTAGGACTAAACCACACAACAATTTACCGTATCCTCTTCGAATAAAGGCTTTAAAGGATTTGCAAATTAAGAAGAAGGAGCCAGAGATATTGAAAACTCTTTTGACCACTAAACCGGAAGTACTCGTTTCCGAACCGGAGATAATAAATTCTGGCCCCGAAAGTCCTGAAACGTTGATTTCAGAACCAGAAATTGCATCGTTTCAAGTGGAAGCCATACTTTCCGAGCCCGATGTTTACGATCAACAGCAAGGCGACGCAGAAAACGGGGAAAATTTGGACAATAATCAAGGGCACAATTATGACACTGTCGATATGGATTCTGATAATGAAATCGAAATTGCAAGGCAACGAGAGAATGAGAAAAATGTAGACGAGAACGATATGGGTCAAGACGGTGAAGGGAATTCCATAGAAATCAATGAAAATAACATTGAAGGCCAACAAAGCGATAAAGACGAGGAGGAGGAAATGGGTGATAGCCAGGACGGTGTGGCAGAATCCAAAGAAGATGAAAATAAAAATGGTGAAACATATGACGATCAAGAACAGCAACAAGGGGACAACGACGAAGAATATGACGACGACCTCCCACCTATGGACATAACACCTGTTGTTGAAATCAATGAGGATATGCAGACGAACTCATTTAATAGCGAAATGAATGAAGACGATGAAGATTTAGACATATCGGCCGAAGCTAACGATACCGTTGACGGTGAGGAGAATGACGCGAAAGATCTCGATCCGGACAAGGTTTATGTTACGAAAACACAGAGAGACTTTATTAATAAGTATCGCGACATAATAGAGCAAATAAATACAAAACGGTGTCTCTGTTGCGACAGGGAACACCCTCGAAGGAAAGCTGTGATCCAACATCTGCAGAAAAACGGTCATAAGGTACCGAAACATACGTGTTACAATTGTGTTGTTACATTTAGCCATATCGGTGCACTGCTCAGTCATATGAGAGCAAATGTTTGCACGGATTTGTGGAAGATTATCTTCGACGAAAATGGTATTACGGATGACATGGTTATAGAAGATGAACCAAAAGATGCCAAAGTTCAATATAAAGACATTTTTAATGCTCGTTCTTATGCTTGTAAACTATGCCCTGCCAAATTCCAACTTAAACAATTTATTATGAAGCATGTTTTGGATGTCCACGAGGATGGACAGTCTATGGTGCCGATGGCGTGTGTTCATTGCGGTTCTAGGTTCAAAGACAAGGCCATGTGGAAGAAACATATCCGCAATGGCGAGTGTACGGTTTACATAGCGTGCGATTTATGTCCTGAAAAATTTATCAGTATGCAAGATTTCAGCGAGCACGCCTTAGCGACACACGCTGGTAATTTCGAACAAAATGAAAATCAGAATAAATGTGTAGACGGAAGACCGACCGATTGCCCTCTGTGCGGGAAGAAGAACAGTAGTTATCCAAACTTGGTAAAGCATTTGAAGATTATACACAACGAAGAGAAACCTCATTACTGTCAACACTGTGATTCTAAGTTCGAACAAGCCGCTGACCTGAACAAACACATTTATATGGAGCACTCTGACCGCGTTTTGGGCTTACAAACCGCCGAACCTGATATGAGTATCGTCAAGGAGGAGACTGAAGAGTATCACTACTCGTGCACCGAGTGCAACGCTATATTCGAAACGGTCGACGCTTGGACCGATCATCAGGTCGCCGAACATAACCAGGTTGCACATCACTGCGATCAATGCGAGAAAAAGTTCTTGCGGCCATCTGAACTCGCCGAGCATAAGAATACGCACTTGCGTGTCAAGTTTTATCCGTGTAGTGTTTGTCCGAACTCGTATAGCACTCCGCAGAAATTGTCTGAGCACGTCCAACAAAGTCACCCCGGAGCGGCTTCATACGCTGCAGCCGATTCCGAATTCTTTTGTGACATTTGCATACGATCGTTTAAGAGTCGCCAGGCTTATTCCAATCATATGCGTATACACGCTAAGGTGCCCACCACTAATAGGAAACCGGGAGATCCAAAAGGATTCTCCCCGCAGATCATCGGAAAGCCTATTAGACAATTCCCGCAAATTGTACCCGGTTTTCCCTCGTTTAAACCAAATTGTAATGTTCCTAACGCCCCTTATTCATGCGATATATGCGGAAAAGGTTTTATGCACAAGAAAAATATTTGGAAACACAAAAAGGTGTTGCATGCTGATATTATTAATGATAGGAATGATAGTGAGGAGAACACTATGCACGCTTCCACCGAAGAGGACGAGTACAATGTTGATGAAAATGGAATCGCTTTATCCACGCCACAGTTCAATAGTTTTAACTTTTCAAGTTTTACCAACAACACACCAGTTCAACAGCCAGACCCGATGCCGTACGTCTGCGACCTTTGCAGCAAGCGTTTCCCACTGAGAACCAGTTTGTGGAAACACAAACGAGCCAAACACGGAATAATTAATCCTGGAGGCGAGCCGCAGTCGGCCGGAGCCGGTAGCGGCGGCAGTAGTAGATCGAGTTGCACTATATGTAAAATTTCGTTCTCAGACAAGAAATCATATTATCGCCACAGAAAGAACGTGCACAAATCATCTACACAGATGTGTAAAATATGTGGAAAACCGTTGAGCACCACCCTCGAACTGTACGAGCACTTGAAAGCGGCTCACGCTAGAGAGTTGCTCGGCTATAACGCCAATCAAGGTTCGTCCAGTAGACCGCAAACGATTACGCAAGACTTGGATCCCGATTACGAAGCTGAAATGGATGCGACCGATCCCGCGGCCGAGTACCAAGCGCGGTACCCTTGCGATACGTGCGGCAAACAATTTGTCGGATTACTCGCATTGCAAAACCATCAATGTCTCAATCAGAATTCGTCCGATCCGCAAACGTTTGATTGCGAAATTTGCCACAAGAGTTACACGTCGATTGCCGCATTAAAGAGCCACCGCGGTTGGCATTTGAGATCTCCGGACGGCAAAGCGGCCGCTAACAATTCAGGTCTGTGGATGCCGCAACACAAGGTGACCAGTAAGGTCAGCAAATACGAAGTGGTCGATGCGGTGCAACTAGCCCGCGTACAGCACTCGACTCCAGCGGCGACTGTGGCCAAAAGGCGTCTGCCGCCAGAAGTCGAAGTGACAGTTGTCAATCCGAACAAAAAATTGCGCTCGGACGACTCGATGGAAATCGAACAGCAAAGTAACCTATCGGGCACCACAGAGGACAGATATTGCAATATATGCGACAAGGAGTTCACTAAGCGCGCGGCTTACCAGCGTCACATGGACGAAGTGCATCAACCGAATTCGGTTTTTTGTCCTGTTTGTGATAAGAGTTTTACGCGGAAATCTACTCTGCTAGTTCACATGAAGAAGCATTATGAGGGCGGCGAGGGCAGTTCGGGGACTGCCGGGCAAGTGGACGATGATAATTTTTCGTGCGATCTTTGCGACGCTCAGTACAATAGTGAGGCCGCGTTGAGGGCTCACCGCGAAAGGCATCACGGCGACGAATCCGGTGAATCAGAGGACGAGGGCATAGCGAATATACTGCCTCCAGGTGAGTTCACTTGCACGCAGTGCGGTGACGGTGTGGCGACACCGCGAGACCTAATCGCTCACCGTTCCATGCACGCGACGCCCACAAAATTCTTCTGCAACATATGCAAGGTGTACTTCACTAGGGCACTAGATCTCTCTTCGCACACGCGCGCGCGACACGCCGACAACGAGAAGGTTTTCTTCCCCTGTGCCATGTGCGACCGTTTCTACATGAACAAGAAGAGTTTGCAGCGACACATTGAGATGTCTCACTGA
- Protein Sequence
- MNIDSFKAKGSSPSIFNLYGYLITLQGAESEKEEEEEEDEEMNEAGDQYPAVANMPEVSITVMRPTGETLQSRQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKIKPKKENPHVMLPKLRPNPFNPKARMMPNPISHKMQFMPKNVPIKQMPRVVIPPKPVPIRTKPHNNLPYPLRIKALKDLQIKKKEPEILKTLLTTKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDVYDQQQGDAENGENLDNNQGHNYDTVDMDSDNEIEIARQRENEKNVDENDMGQDGEGNSIEINENNIEGQQSDKDEEEEMGDSQDGVAESKEDENKNGETYDDQEQQQGDNDEEYDDDLPPMDITPVVEINEDMQTNSFNSEMNEDDEDLDISAEANDTVDGEENDAKDLDPDKVYVTKTQRDFINKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRANVCTDLWKIIFDENGITDDMVIEDEPKDAKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSMVPMACVHCGSRFKDKAMWKKHIRNGECTVYIACDLCPEKFISMQDFSEHALATHAGNFEQNENQNKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHNEEKPHYCQHCDSKFEQAADLNKHIYMEHSDRVLGLQTAEPDMSIVKEETEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQSHPGAASYAAADSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFSPQIIGKPIRQFPQIVPGFPSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEENTMHASTEEDEYNVDENGIALSTPQFNSFNFSSFTNNTPVQQPDPMPYVCDLCSKRFPLRTSLWKHKRAKHGIINPGGEPQSAGAGSGGSSRSSCTICKISFSDKKSYYRHRKNVHKSSTQMCKICGKPLSTTLELYEHLKAAHARELLGYNANQGSSSRPQTITQDLDPDYEAEMDATDPAAEYQARYPCDTCGKQFVGLLALQNHQCLNQNSSDPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKYEVVDAVQLARVQHSTPAATVAKRRLPPEVEVTVVNPNKKLRSDDSMEIEQQSNLSGTTEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSGTAGQVDDDNFSCDLCDAQYNSEAALRAHRERHHGDESGESEDEGIANILPPGEFTCTQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFTRALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -