Sand006896.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000377.1:96880-99811[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.9e-06 0.00018 22.1 4.2 2 23 147 168 146 168 0.98 2 18 0.00089 0.055 14.3 0.9 1 23 171 193 171 193 0.97 3 18 1.2e-05 0.00073 20.2 0.8 1 23 199 221 199 221 0.99 4 18 0.085 5.3 8.1 0.1 5 19 228 242 226 242 0.95 5 18 0.0014 0.087 13.7 0.2 1 23 251 273 251 273 0.97 6 18 2.9e-05 0.0018 19.0 1.0 1 23 279 301 279 301 0.97 7 18 2.4e-06 0.00015 22.4 3.3 2 23 334 356 333 356 0.97 8 18 7.9e-06 0.00049 20.8 1.4 2 23 364 386 363 386 0.94 9 18 8.6e-06 0.00053 20.7 1.6 2 23 394 416 393 416 0.94 10 18 0.00012 0.0076 17.0 1.2 1 23 424 447 424 447 0.95 11 18 0.00022 0.014 16.2 1.1 2 23 455 476 454 476 0.93 12 18 2.3e-05 0.0014 19.3 0.9 2 23 483 505 482 505 0.94 13 18 0.00011 0.0068 17.2 0.5 2 23 516 538 515 538 0.93 14 18 0.00038 0.024 15.5 0.7 2 23 549 571 549 571 0.93 15 18 7.1e-06 0.00044 20.9 0.9 2 23 578 600 577 600 0.96 16 18 2.3e-06 0.00014 22.5 1.7 2 23 606 628 605 628 0.94 17 18 0.0013 0.082 13.8 0.6 2 23 636 658 635 658 0.94 18 18 2e-05 0.0013 19.5 1.9 2 23 665 686 664 686 0.97
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAAGCAAACACCGTTATGCAGATGTTGTCACAAGTATGGTGTATTCAAGAGTTTATTTTCCGACTATACCTACAACGAGAATGAGGTTGAAAATTATTCTCAGATGTTGCACGCTACATTCGGAATCTCATTTGAACCCTTGGAACATAACAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACGAATCTCAACGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACAAGTATCGTTGATTAAAGTCGACGTAAAAGTTGTAAGGGAAGAGACTCCCACTCCCAACGATGAAGACAATCACTCGGATGTAAATGTGGTTTTAGACGAAGTATCCAATCAAGATGGCAGAATTGAAGGGAGCCGAAACGAATTAGATGAAAACTTAATTGAATCTGGGAACGACAGATACGAGAATAAATGCAACATTTGCAATAAAACTTTTAGATTCAAAAAGTACCTAAAAAGTCACATCAAAACGCACTTTAGACATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCTTAGACACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCGATATGTAATAATGCGTTTACACTGAGCAAAAGTTTGAAGGCTCACATGGAAACACACAAGGATGAAAAACCGCAGGAGTGCGGCTGGAAATTCAAAGTCAAGAAAAGCTTATTGAGGCATCCTCAAAACATGGGCGTAAACAAGTACAGTTGCCAGTATTGTGATAAAGGATTTATGATGAAAGGTAGATTGGTTGCACATGAAATGATACACACGGGTGTAAAACAATACGAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAAGATGTTTTGGTAAGTCATAATAAAGTGCATGAGAAACATGAGCCTAACAATTGTAATCTGCGTGAAAATAGATTCAAAAGAAAAGAAAATTTCAATAGACAAATGTTGACGCATGCTGGGATAATAGAGTGCGACATTTGCAAGAAGACATTTCAACACAAACAGAGTTTAAGAAGGCACATGAAGACTGTACATTTGGGCCTTAATCCACCCAGTCAGTGTGAAATTTGCAAGAAGACATTTAAATACAAGCAATATCTACGTAACCACATGTCGGCTGTACATTTGGGCCTTAATCCACCCATTCAGTGCGATATTTGCAAGAAAACATTTAAACACAAGGATTATATACAAAGGCACATGTTGGCTGTACATTTGGGCTTTAAGCCAACGCCCTTTGAATGCAACATTTGCAAGAATACATTTAAATACAAACGAAATGTAAGCAGGCACATGTTGGCTGTACATTTGGGCCTCAAGCCACCCACTCAATGCGATATTTGCAAGAAGACATTTAATAAACAGAGTTTAAGCAAGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATACAAACAAAGTCTACGCGGTCACATGTTGGCTGTACATTTGGGCTTTAAGCCAACGCCCACTACCACTGAGTGCGTCATTTGCAAAAAGACATTTAAATACAAGCAAAGTCTACGCGGTCACATGTTGGCTGTACATTCGGGCTTTAAGCCAATGCCCACTCCCAATGAGTGCGACATTTGCATGAAGACATTTAAATACAAACAGAGTTTAAACAGGCACATTTCGGCTCTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAAAAGACATTCAAATACAAGGAAAATATACGCCAGCACATGTTGGTTGTACATTTGGGCTTTAAGTTAAAGTGCGACATATGCAAGAAGACATTTAAATACAAGCAAAGTCTACGCAAGCACATGTTGGCTGAACATTTGGGCCTTAAGTCACACACTCAGTGCGACATTTGCATGAAGACATTTAAATCCAAAGAGACTATACGCCAACACATGTTGGCTGTACATTCGGACCTTCCACGCACTCAGTGCGAAATTTGCAGGAAGACATTTAAATCCAAGGAGACTATACGCAAGCACATGTCCGTACATTTGGGCTTGAAGCGAACACGCACTAAAAGAAAAGTTATTTAA
- Protein Sequence
- MAATLKQTPLCRCCHKYGVFKSLFSDYTYNENEVENYSQMLHATFGISFEPLEHNKIYTICDECIEKLRISTDLKIACGKIIKQVSLIKVDVKVVREETPTPNDEDNHSDVNVVLDEVSNQDGRIEGSRNELDENLIESGNDRYENKCNICNKTFRFKKYLKSHIKTHFRHRCEVCNRDYQSKGELLRHEMVHKDERKFKCSICNNAFTLSKSLKAHMETHKDEKPQECGWKFKVKKSLLRHPQNMGVNKYSCQYCDKGFMMKGRLVAHEMIHTGVKQYECEKCNKSFRSKDVLVSHNKVHEKHEPNNCNLRENRFKRKENFNRQMLTHAGIIECDICKKTFQHKQSLRRHMKTVHLGLNPPSQCEICKKTFKYKQYLRNHMSAVHLGLNPPIQCDICKKTFKHKDYIQRHMLAVHLGFKPTPFECNICKNTFKYKRNVSRHMLAVHLGLKPPTQCDICKKTFNKQSLSKHMSAVHSDLPPTQCDICKKTFKYKQSLRGHMLAVHLGFKPTPTTTECVICKKTFKYKQSLRGHMLAVHSGFKPMPTPNECDICMKTFKYKQSLNRHISALHSDLPPTQCDICKKTFKYKENIRQHMLVVHLGFKLKCDICKKTFKYKQSLRKHMLAEHLGLKSHTQCDICMKTFKSKETIRQHMLAVHSDLPRTQCEICRKTFKSKETIRKHMSVHLGLKRTRTKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -