Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.053 24 5.4 1.4 17 29 13 25 5 37 0.79

2 10 0.058 27 5.3 0.8 18 29 42 53 36 64 0.85

3 10 0.12 55 4.3 0.6 18 29 69 80 66 92 0.82

4 10 0.059 27 5.2 0.7 18 29 97 108 91 116 0.86

5 10 0.022 10 6.6 2.2 17 38 126 144 117 150 0.78

6 10 0.054 25 5.4 2.3 17 43 154 177 148 181 0.82

7 10 0.00044 0.2 12.1 1.7 17 43 185 208 172 209 0.86

8 10 0.017 7.9 7.0 0.3 18 43 214 236 211 237 0.82

9 10 0.00047 0.22 12.0 1.1 18 43 242 264 238 268 0.91

10 10 1.2e-05 0.0054 17.1 3.8 15 43 270 295 264 296 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.053	24	5.4	1.4	17	29	13	25	5	37	0.79
2	10	0.058	27	5.3	0.8	18	29	42	53	36	64	0.85
3	10	0.12	55	4.3	0.6	18	29	69	80	66	92	0.82
4	10	0.059	27	5.2	0.7	18	29	97	108	91	116	0.86
5	10	0.022	10	6.6	2.2	17	38	126	144	117	150	0.78
6	10	0.054	25	5.4	2.3	17	43	154	177	148	181	0.82
7	10	0.00044	0.2	12.1	1.7	17	43	185	208	172	209	0.86
8	10	0.017	7.9	7.0	0.3	18	43	214	236	211	237	0.82
9	10	0.00047	0.22	12.0	1.1	18	43	242	264	238	268	0.91
10	10	1.2e-05	0.0054	17.1	3.8	15	43	270	295	264	296	0.90

Coding Sequence: ATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCACTGAGTGTGACATTTGCAAAAAGACTTTTAAATCCAAGGTGACTTTATGCCAGCACAAGACGGCTGTACATTCGGGCTTAACATTTGAGTGCGACATTTGCAAAAAGACTTTTAAATCCAAGGGGTATATTCGCCAGCACATGGCTGTACATTTGGGCTTAACATTTGAGTGCGACATTTGCAAAAAGACTTTTAAATCGAATGTGATTTTACGCCAGCACAAGACGGCTGTACATTCGGGCTTAACATTTGAGTGCGACATTTGCAAAAAGACTTTTAAATCCAAGGGGTATATTCGCCAGCACATGGCTGTACATTTGGGCTTTAATCCAACGCCCACTGAGTGTGAAATCTGCAAGAAGACATTTAATCACAAACAGGGTTTACGCCACCACACGTCGGCTGTACATATGGACTTTACATTTGAATGCGACATTTGTAAGAAGACATTTAAACACAAGGATCGTATACGCAGGCACATGTCGGTTGTACATTTGCGCACTAAGCCAACGCCCACTGAGTGCGGTATTTGTAAAAAGTCTTTTAATTACACAGGTGGTTTACGCCGCCACATGTTAGCTGTACATTTGGGCTTTACTACTGAGTGCGACTTATGTAAGAAGACATTTAAAAACAAGGATGGTATACGCAAGCACATGTCGGCTGTACATTTGGGCTTTACATTTGAGTGCGACATTTGCAAGAAGAAATTTAAATCCAAGGCGAATTTACGCCAGCACATGTCGGCTGTACATTTGCGCACTAAGCCAACGCCCATTGAGTGCGGCATTTGTAAAAAGTCATTTAATTACACAGGTTGTTTACGCCGCCACATGTCGACTGTACATTTGGGCTGA
Protein Sequence: MSAVHLGFKPTPTECDICKKTFKSKVTLCQHKTAVHSGLTFECDICKKTFKSKGYIRQHMAVHLGLTFECDICKKTFKSNVILRQHKTAVHSGLTFECDICKKTFKSKGYIRQHMAVHLGFNPTPTECEICKKTFNHKQGLRHHTSAVHMDFTFECDICKKTFKHKDRIRRHMSVVHLRTKPTPTECGICKKSFNYTGGLRRHMLAVHLGFTTECDLCKKTFKNKDGIRKHMSAVHLGFTFECDICKKKFKSKANLRQHMSAVHLRTKPTPIECGICKKSFNYTGCLRRHMSTVHLG

Sequence clustering based on sequence similarity using MMseqs2