Sand009003.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000507.1:297781-299731[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.8e-07 0.0002 21.4 0.1 5 41 1 37 1 40 0.89
Sequence Information
- Coding Sequence
- ATGAGTGCTGCTCTTGAACTTATCGAAGGAGGGAATAGCATTAGGAAGGCTGCTAAACTTAAAAACATATCATATCCAACTTTACGGCGGTATTATTTAAAAACTAAAATGTTTGGCAAAGAGAATATAAGATTGATTCCGAACTACACCATAAATCAAGTATTTGATGCGGAACAAGAAAAAACTTTAATACAGTATCTCAAAGACTGTGCATATACTTACTATGATGAAACTGCAACCACAACAGTGCAGAAACATTCAAAGGTGTTGGGACCAAAAGGCATAAGATGTCTTTCTAAAGTTACTAGTGCCGAGAAAGGAACATTATGCACAACGTGTGCGATAGTTTGTGCTACTGGTCAAGCAATCCCACCAATTATAGTTTTCCCCAGAAAAAATTTCAAAAATTACATGATAAAAGGCACACCTCCTGGTACTTTAGGCTTAGCTGCACCTAGTGGATGGATGAATGCAGAAATATTTCCTCAAGTGATCAAACATTTTATAAAACATACTGGTTCTGCAAAGGAAAATCCGTCTCTTTTGATCTATGACAACCATGACTCTCATATATCTATAGAAGCTTTGAATCTTGCTAAATTACACGGCGTTACAATATTGACTTTACCCCCTCACTCATCTCATAAAACTCAACCCTTAGATGTCGCATTATTTAAACCTTTTAAAAGTTCTTATAATGCAAGTATGGATTCCTGGATGATGAGCCACCCTGGGCAACCCGTCACGATTTATGACGTGGGAACATTCATTGGTGAAGCTTACCAAAAAGGTTTGACACCTATCTCGATTACACATGCTTTTAAGAAAACTGGCATTTTCCCGTTTGATCGAACAGTTTTTACAGACATAGATTTCTTACCGAGCTCAGTGACAGATCGTCCGCCACCTGAGGAAAATCGTCTTAACGAGACCACGGATATGCTGCACACAGACGAAGAAATTTCAGAAAAGGAAAACCCCGAACTCGGGGAAAACTTACCAAATATTGAAGTTCAGCGAAATGATGTCCAAAATGAAAACGTAGAAGGGTTTATCGGCCCTGCAGAGTTTCGTCCACCTTTGAAAGCCCAATCAAGAAAATCTAATAGAAAACCGAGAAAGAAGGGAAAAAGCATGGTGGCAACTGATACCCCTGAAAAAGAAGAACTTCGAAAAGAGAAAGAAGCAAAAATGCGACGTCTACAAATGAAAAACCTGGCAAAGAAGAAAAAAGTAATTAAAAAAGTATTGCAAGATAGCTCTACATCGGAATCTGACGATAATATAAATTTGGAAAGCGATGACCTTAAGACTGATGAAGATGCAGCTGAAGATAATATACTGACTATAAAAGATCAACTGGGAAAACCTACGAGAGATGCTGTTGAAGGTGAATTCGTTTTGGTTGAATTTCAAGGAAAGAAAAATTTAGTTTACTATGTAGCTAAAGTTCTAGGAGTGGAAGATAATGGATATCTAGTTAGTTATTTGAGAAAGAAATCTAGTCAGTATAAATTCACATTGCCCGATATACCTGATTTGGCATCTGTATTTAAATGGGATGTAAAAATAATATTACCAAAACCCACTGTACACGGTACTACTTCTAGACTTCAGAATTCAATTTATTCTTTTAATGTGAACTTTTCGGGTTTAACTATAAGTTAA
- Protein Sequence
- MSAALELIEGGNSIRKAAKLKNISYPTLRRYYLKTKMFGKENIRLIPNYTINQVFDAEQEKTLIQYLKDCAYTYYDETATTTVQKHSKVLGPKGIRCLSKVTSAEKGTLCTTCAIVCATGQAIPPIIVFPRKNFKNYMIKGTPPGTLGLAAPSGWMNAEIFPQVIKHFIKHTGSAKENPSLLIYDNHDSHISIEALNLAKLHGVTILTLPPHSSHKTQPLDVALFKPFKSSYNASMDSWMMSHPGQPVTIYDVGTFIGEAYQKGLTPISITHAFKKTGIFPFDRTVFTDIDFLPSSVTDRPPPEENRLNETTDMLHTDEEISEKENPELGENLPNIEVQRNDVQNENVEGFIGPAEFRPPLKAQSRKSNRKPRKKGKSMVATDTPEKEELRKEKEAKMRRLQMKNLAKKKKVIKKVLQDSSTSESDDNINLESDDLKTDEDAAEDNILTIKDQLGKPTRDAVEGEFVLVEFQGKKNLVYYVAKVLGVEDNGYLVSYLRKKSSQYKFTLPDIPDLASVFKWDVKIILPKPTVHGTTSRLQNSIYSFNVNFSGLTIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01385673;
- 90% Identity
- -
- 80% Identity
- -