Sand000376.2
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000020.1:70001-70354[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-07 5.2e-05 23.2 0.0 1 38 16 52 16 55 0.95
Sequence Information
- Coding Sequence
- ATGAAACCAAAGAAAGTAAATATGCCAAATAAAAGAAAAAAATACTCTAACGAAAATTTATTAAAAGCCTTAGATGCAGTAGAAAAGGGTATGTCCAAAAAACTGTCCTCGAAAACCTTCAATGTACCTAGAGGAACTATCCAGTCGCGATTAAGAAAGCCGTGCAAGGAGCTACCAGGCCCTGATCCAATATTGTCGAACGAAGAAGAGGAAGTTTTAGTAAAGTGGGTTTTAGATTGCTGTCGGAAAGGATTCCCAAAAAGAAAGACTGATTTACAATTGAGTGTAGCAAATTTCTTAAAGAAAACAGGAAGAGATAACCCCTTTAAAGATGACATACCTGGTAGAAAATAG
- Protein Sequence
- MKPKKVNMPNKRKKYSNENLLKALDAVEKGMSKKLSSKTFNVPRGTIQSRLRKPCKELPGPDPILSNEEEEVLVKWVLDCCRKGFPKRKTDLQLSVANFLKKTGRDNPFKDDIPGRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00737424; iTF_00837434; iTF_01431807;
- 90% Identity
- iTF_01431807;
- 80% Identity
- -