Sand012202.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- clz9
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000741.1:15725-17794[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-10 8.5e-08 32.2 0.0 1 37 16 53 16 60 0.88
Sequence Information
- Coding Sequence
- ATGGTTCGTAACTACAAAAGGAAGAATACTAGAAGCGGTATAATAGATGAAGAAGCGATGGCATCAGCAATTAAGGAGGTCCTAAATAAAAATCTGTCTATTAGGAAGTCTGCAAATAAATATGGTATAAAGCCATCAACACTTGAAACTCGTATTAATAACATTCGTAAAACCAAATCTGCCGAACCTACTACATCCAATCGATCGTTTGACTCAAAGTATACTGCCAATcaagtttttaccaaagtagaagaaaatatgctgaatgagtatattaggatcagttccaaaaggcactatggtttaacacttgaacaaattaggaaacttgcctaccaatttgcaaaactgaataactttcgatatccgcctagctgggatgagaacaaaatggccggtaaagattggttggcctgctatcgtaaacgaaacaccaatttgagtttacgaaaacccgagaatactagtgcagctaggtcatttggatttaataagtcagctgttggcgaattctttgagaaactggaacaagttttacagaaacacaaattcactggagatcgtatttacaatttcgacgagtctggcatttccacagtattaaatacgcccagagttctagctgaaaaaactcaaaaacaagtgggtcaacttgtgtctgctgaaagaggggagctagttacttttggtggctttatttgcgcaaatggaaatacaatcccacctttatgtgtatttccaagggtgcattacaaagaccatttcattgatggtgcaccagaaggaagtttgggtgtagctaccaagagcggttggattaattcagacatttttttagatgtcctgaaacatatgcaaaaacatacagcgtgctcaaaagaaaacccaattttacttctgtgtgacaatcacgaaagccacgtgaccattgatgcaatcaattatgcacgcgagaatggaattatttatttgtcattccctccacataccacgcaccgtctccaaccgttggatgttggagtttttggcccattcaaatcaaaactaaaaactgcattcaacgactggcatgtgtctaatccagggaaaactcttaacatctacaaCATTCCAAAACTGGCCAAATTAGCCTATTTTGAGTCTTTCAATGGAAAGAATATTACTGCTGCTTTCGAGAAGACCGGAATATGGCCATTCAACAAACTTGTTTTCAGCGACGAAGATTTTGCTCCAGTGCAAGTATACCACAACGACTCTGCGCCAGAACCATCTGTGACTAATGCTGAAACCACCAATGATGAAGCTGCGCCTCAAGAGGCTCCGCATACTTCACCACCTGCATCTCCTTCTTTGTTGCCTGTAGTTTGTTCATCGCCCAGTTACGGAATGGCTTTACCATCGACATCTTTAGGAATAGTAACACCACAGATGATCCGACCCTATCCTAAAATACATAAAAATTCGTCTACAACAGCTAAGATGGGAAGACAAATTGGCAAATCAAGAATATATACTGACACACCTGAAAAAAATAGACTTGAAGACATTGCACGAGCAAAAGAAATGAAGAAAATTGAGAAAGAACGAAAAAATAGAGCGAAGGAGATGAAACGTGCTCTGAAATTAGTATCGACCGAGGTTGAAAATTCAAAGAAACAAAAGAAGGATTTAGATTCTGATAGTGAGACTGACATTGATATGAGTTTGAGAGAAAGTTCTGCTTCTCCGGTTGATGACATCTGTGAAGAAACAGAAACACCTGTTTTGACTCACAACATTAAGAAAGGAAGTTTTGTAGTGGTTAAATTTGATAAAAAGAAGTCAGTTTTACATTACGTTGGAGAAGTCATTGAAAAATATAGCCCATCAGAATATAAAATCTCATTTTTAAGAAAGAAGCAGGGAAAGGCCGGTTCTTGGAATTTTGTGTATCCAAATACGAAAGATGAAGGGTCTGTTCTTATTTCAGATATTGTTCTCATACTGCCAAAGGCCAAATCTGCTGCTACAGCGAGGACTGCCAGTATTTTTAACTTTGGAAAAGATTTTTCTCCATACAATATCCAATAG
- Protein Sequence
- MVRNYKRKNTRSGIIDEEAMASAIKEVLNKNLSIRKSANKYGIKPSTLETRINNIRKTKSAEPTTSNRSFDSKYTANQVFTKVEENMLNEYIRISSKRHYGLTLEQIRKLAYQFAKLNNFRYPPSWDENKMAGKDWLACYRKRNTNLSLRKPENTSAARSFGFNKSAVGEFFEKLEQVLQKHKFTGDRIYNFDESGISTVLNTPRVLAEKTQKQVGQLVSAERGELVTFGGFICANGNTIPPLCVFPRVHYKDHFIDGAPEGSLGVATKSGWINSDIFLDVLKHMQKHTACSKENPILLLCDNHESHVTIDAINYARENGIIYLSFPPHTTHRLQPLDVGVFGPFKSKLKTAFNDWHVSNPGKTLNIYNIPKLAKLAYFESFNGKNITAAFEKTGIWPFNKLVFSDEDFAPVQVYHNDSAPEPSVTNAETTNDEAAPQEAPHTSPPASPSLLPVVCSSPSYGMALPSTSLGIVTPQMIRPYPKIHKNSSTTAKMGRQIGKSRIYTDTPEKNRLEDIARAKEMKKIEKERKNRAKEMKRALKLVSTEVENSKKQKKDLDSDSETDIDMSLRESSASPVDDICEETETPVLTHNIKKGSFVVVKFDKKKSVLHYVGEVIEKYSPSEYKISFLRKKQGKAGSWNFVYPNTKDEGSVLISDIVLILPKAKSAATARTASIFNFGKDFSPYNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367681; iTF_01367682; iTF_01367683; iTF_01367684; iTF_01367685; iTF_01367686; iTF_01367687; iTF_01367688; iTF_01367679; iTF_01367680; iTF_01098419;
- 90% Identity
- iTF_01098419;
- 80% Identity
- -