Sand015943.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020001117.1:48440-50281[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.2e-12 1.3e-09 38.0 0.0 4 43 18 57 16 59 0.90
Sequence Information
- Coding Sequence
- ATGCCTCGAAAATGGGATAGAATTACGGCGAAGTGTCAGTGGAGTCTGGATGTACTAGATCGTGCAATCAAGAGAGTAAATGATGATGGAATTTCTTTGCATAAAGCATCCCAAGAGTTTAATATTCCGTATAGCACTTTGCAAAAGAGGTATCGCAAATCAGAACAAACACATCCTCGTCTCGGAAGAAAACCAGTATTTTCTCCTGCTCAAGAACGAGTGCTGGCTTGTCACTTAATTCATTTGACGAATCTTTTTTTCGGATTAGACTCTATGAAATTCAGAAAAATAGCATACGAGTGTGCTGAACAATTGAAGATACCTCATAATTTTAACAAGGAAAGCAAGTGTGCGGGACCAGATTGGCTAGAAGGATTTTTGAAGAGAAATACTAATATCAGTGTTCGCAAACCTGAGTCGACAAGTATTAATAGAATTGAGGGTTTTAACAAAGAAGAAGTAAATCTATTTTACAAAAATCTTGAAGAACTTATGGTTAAAAATAAATATACAGCACATCAAATATTTAACATGGATGAGACAGGAGTGTCAACAGTTCAAGAACCAGGAAAAGTTTTGGCAAAAACAGGTCAAAAACGAGTTGGGACTGTCACATCTTGGGAGAGAGGAAAAACGATCACTGCTGTCTGTGCAATGAGTGCTGCTGGCATCTATGTCCCACCCATGTTCATATATCCAAGGCAACGTCATTCTCCTCTTCTAGAGAAAGACGGTCCTCCGGGCGCAATTTATGATTGCTCAAAAAATGGATGGACTAATGAAAGTCTTTTTTTTAAATGGTTAAAACATTTCAAAGCATTTGTAAAACCATGTGAGGATAACAAAATATTACTTATTTTAGACAATCATAACAGCCACTCCACTTTAGAAGCATATGAGTTTTGCAAAGCCAACTTCATCACAATGCTATCTATACCCCCACACTCCTCCCATCGTTTACAGCCCTTGGACGTGACATTCTTCGGTCCCCTAAAAAAAGCATACAATCGTGAATGTGATCTGTATCTTAAATCCAAAAATTTGACCAAAATCACGCCATATGATATAGCCGGTTTGTTTCAGAAAGCATACAGCAAAGTAACTTCAATGGATAAAGCTATAAGTGGTTTTCGCGCAACTGGCATAAGCCCAATTAATGCGAATACATTCAGCGACGAAGACTATTATGTCGTCAATAGTGCTTCCACCAACGTAGTGGATGACGCTATAGTTCCTCATCAACCTAATCAGAGCACTGCGATTCCGTCTTCTGGCAACGAATTTCAATCACCCGAATGGGTTACTAGTGAAAATGGCCAAAACAATGATGGAAACGTCCAAAAAGACGTTCTATCTGCTTTCTCTGAATTAAACCTAAATTCTGTACTGGAACTATTATCCCCTGTTCCATCAACTTCTCGAGAGGTCCGGAAACGAACACATAAACAACATTCGCAAATAATCACTGCCACTCCAAATAAAACTGTATTAGAAGAAAAGAAAAAGAAACGTGTCATGAAAGAAAATAAAGCACCGAAAGGAAAAGGTAAAAACTTTAAAGAAGCAAAGAAAACCAACAAAGCAAATGAAAAAGGTAAAAAATTCCTATTTAAAGACGATACCAGTTCATCAGATGAATCAGTCAATTACCAGTATGTCTGCGATGATAATAGTAGTGACTACGTTGATGAAGATTCCAATATGTGTTTGATTTGTGGTGAATATGGAAAATCTAACGAAATATGGTACAGATGCAGGTCCTGTGGTGAATGGGCACACGCTCAATGTTCAGGAAGTGATTCAGCCGAAAATTATATTTGTGACTTTTGTATTAGGAAATAA
- Protein Sequence
- MPRKWDRITAKCQWSLDVLDRAIKRVNDDGISLHKASQEFNIPYSTLQKRYRKSEQTHPRLGRKPVFSPAQERVLACHLIHLTNLFFGLDSMKFRKIAYECAEQLKIPHNFNKESKCAGPDWLEGFLKRNTNISVRKPESTSINRIEGFNKEEVNLFYKNLEELMVKNKYTAHQIFNMDETGVSTVQEPGKVLAKTGQKRVGTVTSWERGKTITAVCAMSAAGIYVPPMFIYPRQRHSPLLEKDGPPGAIYDCSKNGWTNESLFFKWLKHFKAFVKPCEDNKILLILDNHNSHSTLEAYEFCKANFITMLSIPPHSSHRLQPLDVTFFGPLKKAYNRECDLYLKSKNLTKITPYDIAGLFQKAYSKVTSMDKAISGFRATGISPINANTFSDEDYYVVNSASTNVVDDAIVPHQPNQSTAIPSSGNEFQSPEWVTSENGQNNDGNVQKDVLSAFSELNLNSVLELLSPVPSTSREVRKRTHKQHSQIITATPNKTVLEEKKKKRVMKENKAPKGKGKNFKEAKKTNKANEKGKKFLFKDDTSSSDESVNYQYVCDDNSSDYVDEDSNMCLICGEYGKSNEIWYRCRSCGEWAHAQCSGSDSAENYICDFCIRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00776673;
- 90% Identity
- -
- 80% Identity
- -