Sand021847.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020002313.1:19035-21027[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-12 5.5e-10 39.2 0.0 3 39 17 52 15 56 0.91
Sequence Information
- Coding Sequence
- ATGCCGCGGAACAGACCTAGAACAACAACTAAAGCAAAATGGAATAAAGAGGACTTGGAAAAAGCTGTACGAGCTGTGCGTGATGGAGTTTCTATACGGAAAGCTTCCAAGATATTCATGATACCCTTCAGTACTTTACAAGAAAGAATCAAGAAGAATCTTCCTATTACTGCACCTTCTCTAGGAAGACATGCCACTTTCTCACCAGAAGAAGAGAAAGGTATGGCTgagaatataaaacttttggctaaattatattatggtctcagtccactgcaagttcgccgtgcagcttatgtttatgctgagaaacacaatataaagcatacattcaacaaagagaggcaaatggctgggaaagattggctttatggttttttaaagcgaaatccttcgataactatccgtcagcctgaggcaactagtatcaatcgcgtgacagcattcaacaaagaggaggtggccttgttctttaaaaatttggaaggcattatggaaacgtaccagtttgctgaatcaaaaatatataacatggatgagactggtatcagcaccgtgcaagaccctggtacagtcattgctgaaaagggacagaagagagttggatctgttacaagttatgaaaggggaaaaaatatcacggtcatttgcgcagtgtctgcttctggatcctatatacctccaatgtttatttacccacgcaagaggatgtcaccacagttgagcaaagatggtccaaatgaagctatttaccactgctcgaaaaatggctggacgaatcaggatttatttgtaatatggctcaaacactttGTGCAGtttgcgagaccgtcttcggctgagccaatgcttctggttttggacaatcattacagccacgtgtctttagaagcatacacattctgccgagaaaacttcattgttgtactatccatcccgccgcacacctctcacagaatgcaaccgttagatgttgcattttatggccccttgaaagctgcctTTCGGAGGCAGTGTGATTTGTTTATGAAAAGTCACGCTTTGCTGAAAATAACTCCGTACGAGGTGGCTTCTATATTCAACAAAGCCTACTGTGACACAGCTACAATTCAGAAAGGAGTTTCTGGATTTAAGGCGAGTGGAATTATGCCTATCGATCCTACCGTTTTTGGAGAAGAGGATTTCATGGCCTCAGACTATCTATTGGGTTCCCGAAACGACACTGTTACTGTGATGAATGATTCCACAGCTAACCCTATGGACCATGATCAAGCAACATCTACCTTTCCACTTGAGGCCAATAATTTGCCAGGACTCAGCGCCCAAGTAGCGATTGCTCCTGAGGCAAATAACTTGCCAGAAACAAGCGACCAATTACTGGATACTCATGAGCTAGAAAACGTGCAAATACCAAACAATCCGCACTCAGCTATCCTAACAGCAACACCCCTGAAAGCAGAATTAGAAAACAAGGAAAGGAAAAGACAAGAGAAGTTGTCAAAAGACAGCAAGAAGATTGACAAGACAACTGAAAAGAAAATTAACAAGAAAACTGACAAGAAAAAGACGAACACCACCACCAAACGAAGACAACTTAAGACCAGTAAGAAATCAAGGATCGATTCAGAATATTGTTCTTCGGATGAAGAAGTTTTGGCTTCTAAGAAGAAAAAGAAAAATCTGAAATCTACCAGGTCAATCCCAGACTCGTCAgatgaagaaaaccttgaaagtatagatgacagtgatcaagaaatatgttgcatttgcaaagaatttgggaaaaatgaaatttggttcagatgtcgaggttgtggaaagtgggcacacaaagaatgctccggagccgatTCTCCTGAGAAATACGAACGCGATTCTTGTGTGCGTATGAATAAAGTTACAAAACGCCTTGATTTGTAG
- Protein Sequence
- MPRNRPRTTTKAKWNKEDLEKAVRAVRDGVSIRKASKIFMIPFSTLQERIKKNLPITAPSLGRHATFSPEEEKGMAENIKLLAKLYYGLSPLQVRRAAYVYAEKHNIKHTFNKERQMAGKDWLYGFLKRNPSITIRQPEATSINRVTAFNKEEVALFFKNLEGIMETYQFAESKIYNMDETGISTVQDPGTVIAEKGQKRVGSVTSYERGKNITVICAVSASGSYIPPMFIYPRKRMSPQLSKDGPNEAIYHCSKNGWTNQDLFVIWLKHFVQFARPSSAEPMLLVLDNHYSHVSLEAYTFCRENFIVVLSIPPHTSHRMQPLDVAFYGPLKAAFRRQCDLFMKSHALLKITPYEVASIFNKAYCDTATIQKGVSGFKASGIMPIDPTVFGEEDFMASDYLLGSRNDTVTVMNDSTANPMDHDQATSTFPLEANNLPGLSAQVAIAPEANNLPETSDQLLDTHELENVQIPNNPHSAILTATPLKAELENKERKRQEKLSKDSKKIDKTTEKKINKKTDKKKTNTTTKRRQLKTSKKSRIDSEYCSSDEEVLASKKKKKNLKSTRSIPDSSDEENLESIDDSDQEICCICKEFGKNEIWFRCRGCGKWAHKECSGADSPEKYERDSCVRMNKVTKRLDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00895829;
- 90% Identity
- iTF_01385632;
- 80% Identity
- iTF_01385632;