Basic Information

Insect: Sympetrum striolatum
Gene Symbol: -
Assembly: GCA_947579665.1
Location: OX388352.1:90740742-90751493[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.083 29 8.0 5.6 1 21 217 237 217 238 0.93

2 11 0.00043 0.15 15.2 0.9 2 23 246 267 245 267 0.97

3 11 0.12 42 7.5 0.4 2 17 303 318 302 323 0.87

4 11 1.3e-05 0.0046 20.0 2.4 1 23 329 351 329 351 0.99

5 11 6.2e-06 0.0022 21.0 2.0 1 23 357 379 357 379 0.97

6 11 9.3e-07 0.00033 23.6 1.3 1 23 385 407 385 407 0.98

7 11 1.5e-05 0.0052 19.8 4.7 1 23 413 435 413 435 0.98

8 11 0.00068 0.24 14.6 5.8 1 23 441 463 441 463 0.97

9 11 5e-06 0.0017 21.3 1.6 1 23 469 491 469 491 0.99

10 11 2.7e-05 0.0095 19.0 0.7 1 23 495 517 495 517 0.98

11 11 1.8e-05 0.0061 19.6 0.3 1 23 526 548 526 548 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.083	29	8.0	5.6	1	21	217	237	217	238	0.93
2	11	0.00043	0.15	15.2	0.9	2	23	246	267	245	267	0.97
3	11	0.12	42	7.5	0.4	2	17	303	318	302	323	0.87
4	11	1.3e-05	0.0046	20.0	2.4	1	23	329	351	329	351	0.99
5	11	6.2e-06	0.0022	21.0	2.0	1	23	357	379	357	379	0.97
6	11	9.3e-07	0.00033	23.6	1.3	1	23	385	407	385	407	0.98
7	11	1.5e-05	0.0052	19.8	4.7	1	23	413	435	413	435	0.98
8	11	0.00068	0.24	14.6	5.8	1	23	441	463	441	463	0.97
9	11	5e-06	0.0017	21.3	1.6	1	23	469	491	469	491	0.99
10	11	2.7e-05	0.0095	19.0	0.7	1	23	495	517	495	517	0.98
11	11	1.8e-05	0.0061	19.6	0.3	1	23	526	548	526	548	0.99

Sequence Information

Coding Sequence: ATGGATTACACCTGCTCGAGTGACTCAAATTTGCCATTAAAGAATGAAGGCAGTACCTCCCATGAGAATGAAAATGCAAAAGATTGTGAGAATGAGGAAGAGCAAGATATGTTTCAGTGCTCATGTGGGATGATGTTCAAATCTATCGTAGATCATCTGATGAAATACCATTGTGATGAAGAAGTAATAGTCAAGGGTTCCTCTGATCAACTGGAAACTCTATTGAACCCAGTTGCTCTTGAAGATTTGGTTAACAAAGATCAAGCGGATATAGTGGCTCAGGAAGTAACAATCCAGGATGTTGATTGTACTCCTAGCTCAACAGTTGAGGAGCCTGAGGTGATTGTTTGTGATAGGGACAATCCAGTTGAAGAAAATAAGAAATCTGCAACTTCTTTGCAGAAAGTGAAGATTGATCAGTTAGAAGGGAAGGTTGAGGAGTGTATGGACAAGGATGGGAGATTATATTTACGAAAGTTTGTGAGGGTAGAGAAGTTTTGGAGTGAGAAGGATGAATTAAAAGCAGCCAAAATGATGTCAATGGCTAAGAACTTTGAGCCTGTCAGAGATGTCCCAGTTGGAAGTGTTTCAATTAAAACTAAAGATGAAGCAATCCCTGATAAACTGAATGGGGTTCCAAAGAAGTTATTTCAATGCTCTAAGTGTCAAAAGACCTTTCAAACTATGATACATTTCCGTTATCATGTTTGCTCGGTCAAGACTGGTCCATCGACAACTTGCAACCTGTGTGGGCATGAAAGCACTTCTGCAAAAGACCTCAGAGCTCACTGGCGCATGCATCAGAGACAAAGAAGGGTTGCTGCCACTGCCTTATGGGAGCTTCAAGCAAGTGAAGGGATAACTACTAACAGCTGTTCAGTTCAGGAGGAAGACTCGGCAGAGTTACAATGTGAGAGGTGCGGTAAGATGTACAAAAAATGTAATGAGCTGATACACATAGCAATGCATGAAGAAGAGCCCCCTTACCGCTGCAAAAAGTGCAGCGAAACGTTTGATGCAAAAGATAAGTTAAGTCGGCATATGAGGTCACACAGAGAGCAGAAGACACATGTATGCCTCTATTGTGGAAAGACGTTTACGGACTCAAAtgccttcaagctccatgttcgctcacatacaggagagaaaccatttgaatgtacgtattgtgggaagacattttcaaggccttatgaaaggatgaagcatgaaagaattcatactggtgaaagacctcatgtttgtgaaatatgtggtaagacatttcgtgttagctactgtttgactctccacaaaaggactcattctggtgatcggccctactgttgtgatatatgcgggaaaaggtttAAGGCCCATTCAGCATACAAGCACCATGTGCAGATCCACTCAGAAGAAAGGAATTACAAGTGTCCATATTGTCCTAAAGCTTTTAAAACTATGGTGCACCTAGCAGGCCATAAGAAAACTCACACAAAGCCTTTCTCCTGCACAGAGTGTAACCGGAGATTTGCTTCCCTTTATTCTGTCAAGGCTCACATGGAGTCCCATAAAACTGGAGACAATCGATTTAGATACAGATGCTTTGTGTGTGGTGCATCTTATGCAAGAGCATTTGCTCTGCAGTATCACATGCAAACCCATGGGCCCTGTGATGCTCCAGAAGATGTTGCTGAAGTTTTGGAAATATGTGAAGAACAGGATATTAAGAAAGATGAGTGTTTATCAGAACTGGAAGAAGAATATATTGAAAGTAAAGATGTGGATGATATGGAGTGTGTTTCTTTAAAAGCAGATCAAGCCTCTGATGTGCAAGATGTGCCTCCATGGACATTGCTCCATGCTGTGCAAGGAATTGCCAGGGCATTGGATAGTGTCACTGCAAACACTATTTCCAACTGTTGGAGATCAGCTGGTTTTGGTGATACATCAATTATAGAGACAGAGGATTTAGTGGAGGTTCCCACTCAACAGGACCTCCTTAGTAAAGAAATGGCACAACTAAATCAGTACATCCTAGATGCATCCTCTCATGCTGAGACATATGTCAAGTGTGACTCTCATGTGATGAAGTATAACTGCAGTGAATTTAGTGAAGACGAAGAAGATGAGGAGAAGTGA
Protein Sequence: MDYTCSSDSNLPLKNEGSTSHENENAKDCENEEEQDMFQCSCGMMFKSIVDHLMKYHCDEEVIVKGSSDQLETLLNPVALEDLVNKDQADIVAQEVTIQDVDCTPSSTVEEPEVIVCDRDNPVEENKKSATSLQKVKIDQLEGKVEECMDKDGRLYLRKFVRVEKFWSEKDELKAAKMMSMAKNFEPVRDVPVGSVSIKTKDEAIPDKLNGVPKKLFQCSKCQKTFQTMIHFRYHVCSVKTGPSTTCNLCGHESTSAKDLRAHWRMHQRQRRVAATALWELQASEGITTNSCSVQEEDSAELQCERCGKMYKKCNELIHIAMHEEEPPYRCKKCSETFDAKDKLSRHMRSHREQKTHVCLYCGKTFTDSNAFKLHVRSHTGEKPFECTYCGKTFSRPYERMKHERIHTGERPHVCEICGKTFRVSYCLTLHKRTHSGDRPYCCDICGKRFKAHSAYKHHVQIHSEERNYKCPYCPKAFKTMVHLAGHKKTHTKPFSCTECNRRFASLYSVKAHMESHKTGDNRFRYRCFVCGASYARAFALQYHMQTHGPCDAPEDVAEVLEICEEQDIKKDECLSELEEEYIESKDVDDMECVSLKADQASDVQDVPPWTLLHAVQGIARALDSVTANTISNCWRSAGFGDTSIIETEDLVEVPTQQDLLSKEMAQLNQYILDASSHAETYVKCDSHVMKYNCSEFSEDEEDEEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01131715;
90% Identity: iTF_01131715;
80% Identity: -