Sstr011435.1
Basic Information
- Insect
- Sympetrum striolatum
- Gene Symbol
- -
- Assembly
- GCA_947579665.1
- Location
- OX388345.1:29199332-29200780[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.4e-05 0.015 18.3 3.8 1 23 100 122 100 122 0.98 2 11 7.3e-06 0.0026 20.8 6.0 1 23 128 150 128 150 0.98 3 11 7.6e-05 0.027 17.6 5.9 1 23 156 178 156 178 0.99 4 11 6.8e-06 0.0024 20.9 3.1 1 23 184 206 184 206 0.96 5 11 2.4e-06 0.00085 22.3 2.0 1 23 212 234 212 234 0.96 6 11 2.3e-05 0.0081 19.2 0.2 1 23 240 262 240 262 0.98 7 11 0.00086 0.3 14.2 2.3 1 23 267 289 267 289 0.98 8 11 0.00019 0.066 16.3 1.2 1 23 295 318 295 318 0.95 9 11 0.00037 0.13 15.4 0.6 1 23 325 347 325 347 0.97 10 11 0.00019 0.066 16.3 3.9 3 23 381 401 379 401 0.95 11 11 1.1e-05 0.004 20.2 2.8 1 23 407 429 407 429 0.96
Sequence Information
- Coding Sequence
- ATGTTCTTAATGAACGATAACCTTCAAAATAACACCCGAGTTCTTCCGAAGAACGTTTTCAGTACACCTACCGAAACCAGTCCGTTCGGTGATCCCAAGTGTAACTTCGATTCCAATTCTTTCTGTTGCGGGAGCAATGGGTTGGCGTTCGGGGACAAGCACGTCGTTGCCAAACATCAGCTGTCAATCTGCGGCATTCCTACCGCGGAGGAAAAGCCCACCGACCCTCCGCCTCCTCCGCCTGTCGATCAGCGGCTctcggaagacaaatgcctcccgaaaccaaaggagcgcccattttcatgcgaggagtgcgggaagtccttcctcctcaagcaccacctaaccacgcatataagagtacacacgggcgagcgcccttacgtgtgctccgagtgcggcaaatctttcgcccacaagcactgcctagtcacccaccagaggcttcacaccggcgagcgcccttacacttgtctcgagtgcaagaagtccttcacgctgaaacaccacttggtaacgcacacccgcgtccactcccgcgagcggcccttctcatgcgacgagtgtgggcgcactttttcccagaagaggcacctcgtcactcattccaaactgcacaccggcgagcggcccttcgcttgcgacgaatgcggcgagtctttctcccagaaggagcatctcaccacacactcccgcttccacggaggcgagcgtccctatgtgtgtcccgactgcggaaacgccttccaacgcaagtttcagctcgtgagccacgcacgcctacacgggaagcgcccctactcgtgccactcatgcggtaaggaattcttgcagaagaggacgctggtggcgcacacgaggctgcacaccggagagcggcccttctcttgtcagcactgcggagaggccttcggacgcaagtgcgagttggcggtgcattcgcgggcggcgcacaccaccggaggtcgctctttcgcatgcaggcagtgcggcaattgcttcgcgAGCAGAGAAGGCCTCGCACTGCACCTCCGACTGCACACCGGAGACATTTGCGGCGTTGCGTTCTCTGCAGAAGTCCCCGCGGAAAACCGTTTGGCACCTGCTGTCGAAGTCTCTCAGCCGCAGAAGCCGCACTTGTGTCTGCAGTGTGGGAAGTCTTTTGCGCAAAAACACGGGCTAGTGCAGCACACCAAGAGGCATTCCGGAGAGAAACCACATTCATGCGACAAATGCGGGAAGTCTTTTGCACAGAAGTACAGCTTGTCTCTGCACTCTCGACTGCATCCACCGTCAGAGGAGCCTGTCTCCGGCCCCGCTACCATGCTGCACGCTCCCATGATGCAACACTCTAGTCCTGCTCTCCACTCAGCATCACCAGTAGTTCAGCACGCACCTGCCCTTCGACCTCCCATGCAGCATTCCAGCCCTCCAGCTCCTTCAAATTGA
- Protein Sequence
- MFLMNDNLQNNTRVLPKNVFSTPTETSPFGDPKCNFDSNSFCCGSNGLAFGDKHVVAKHQLSICGIPTAEEKPTDPPPPPPVDQRLSEDKCLPKPKERPFSCEECGKSFLLKHHLTTHIRVHTGERPYVCSECGKSFAHKHCLVTHQRLHTGERPYTCLECKKSFTLKHHLVTHTRVHSRERPFSCDECGRTFSQKRHLVTHSKLHTGERPFACDECGESFSQKEHLTTHSRFHGGERPYVCPDCGNAFQRKFQLVSHARLHGKRPYSCHSCGKEFLQKRTLVAHTRLHTGERPFSCQHCGEAFGRKCELAVHSRAAHTTGGRSFACRQCGNCFASREGLALHLRLHTGDICGVAFSAEVPAENRLAPAVEVSQPQKPHLCLQCGKSFAQKHGLVQHTKRHSGEKPHSCDKCGKSFAQKYSLSLHSRLHPPSEEPVSGPATMLHAPMMQHSSPALHSASPVVQHAPALRPPMQHSSPPAPSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01131708;
- 90% Identity
- iTF_01131708;
- 80% Identity
- -