Sstr020144.1
Basic Information
- Insect
- Sympetrum striolatum
- Gene Symbol
- ZNF236
- Assembly
- GCA_947579665.1
- Location
- CANPUZ010000102.1:1-69656[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.3e-05 0.012 18.7 1.6 1 23 61 83 61 83 0.98 2 13 1.2e-05 0.0042 20.1 0.8 1 23 89 111 89 111 0.99 3 13 3.9e-06 0.0014 21.6 1.4 1 23 117 139 117 139 0.98 4 13 0.00099 0.35 14.1 3.2 1 23 145 167 145 167 0.98 5 13 2.1e-06 0.00073 22.5 5.3 1 23 242 264 242 264 0.99 6 13 0.0012 0.4 13.8 0.2 3 23 272 292 270 292 0.96 7 13 7.2e-05 0.025 17.6 0.2 1 23 303 326 303 326 0.95 8 13 1.7 6.1e+02 3.9 0.9 1 23 338 361 338 361 0.91 9 13 0.00038 0.13 15.4 3.0 2 23 938 959 937 959 0.98 10 13 8.6e-08 3e-05 26.8 4.0 1 23 1072 1094 1072 1094 0.98 11 13 1.7e-05 0.0061 19.6 1.4 1 23 1100 1122 1100 1122 0.98 12 13 1.6e-05 0.0055 19.7 2.0 1 23 1135 1157 1135 1157 0.98 13 13 7.9e-05 0.028 17.5 2.7 1 23 1163 1185 1163 1185 0.99
Sequence Information
- Coding Sequence
- ACATCTTCAGCCAAAGAAACAAAGACTGAGAAAAAGGTGGCGGAAGGCGAGAAGAAGACTGAAGAGAGCCCCAAGGCTGCTGGAAACAACTCGTGCATCTTAACGCTGGCAGACAAGGCGCACGACGGATCTGTCAGGCGCTATAACATTAAGGTCCGTCGTGCAGGTGGGGTGAGGTGGCACCAATGTACGTACTGCATCAAAGAGTTCAAGAAACCGTCGGATTTGGTGCGGCACATTCGGATTCATACACACGAGAAACCATACAAGTGTAACCAGTGCTTCCGTGCCTTTGCTGTGAAATCCACGCTAACGGTCCATCTGAGGATCCATTCCGGTCTCAAGTCATACGAGTGCGTAACGTGTAAGAAGAAGTTTGCGTCTCAATCTTCTCTTAAAGTCCATCAAAGGCTGCACTCCGGTCTGAAGCCCTTTTCATGTCCCCATTGCCCTCTGCGGTTCCGCACCACAGGACATCAGAAGGCCCACATCTCGTCGCACTTCAGGATCAGGCCGAAGGTGAAGAAGGAGAAGAAACCTGGGAATGAGGATCCAGGGATGAGAAGGGTCCTCCTACAAGAGCCAATCGTCATCAAACAGAACGTGGAGGGAGACCCTTCTGCTCAGGTCGTGGAGAACCCCCTGCCAGAGGAAATAGTGAACAAAATAGCAGCCGTTCTACCGGAAGGGGCAGTGGCGGAGCAGATGCGAGAGATCAGGCCGTACAAATGCGAGGAGTGCCACGCTGCGTTCAAGAAGCAGTCGCATTTAAGACAGCACATGAGATCCCACACTGGAGAAAAGCCATTCGGATGTCTCTCATGCAACAAGGCCTTCGTATCCAGGGGAGTGCTGAGGGCCCACATCAAGACCCACATTCCATTCATGTCCCCACTCAGAAGACCACACGAGTGCAGTGAGTGCGGACGGAAATTCGTAGCGGCCGGAAGTTTGAAGCGGCACATAATCAACGCTCACGAAAATCTCAGAAAGACGATCTTGAAGCAGACCTACCTGTGTCCGTACTGTCCCACGCCACCCTTCAACTCCAACAAGGCTTGCAGGAAGCACATAATGACGCACTcggatgaactgcttgcggcgcagcaacaagagcagcaggcgcagcaaatggagcagcaggtgcagcaaatagagcagcaggtgcagcaaatggagcagcaaatggagcagcaggtgcagcatatggaagaagtcgagcagcatgaagtagATGACATGAACACCTTAAATGTACAGAATCCAGATCCTGTTGATAGTGGAATGATTCAAGAAGAGCATGTTATGGAGGCTACGGAAACCATAGTCATGGAAGCGGATGATAGACTAGAAGCGGAAGTGGACTCAGAAGTGGCGAACAACGTCGTGGTCACATTCTCCCTCAACTTCCAGACAGCGGACGGCTTTGAGCAGCAAGTCAACAATCATTGTGAGTCGTTCATTCATTGTTATTACCAATATTTACAACATTTACTCAACCTTTTTTTGTGCCGGTGCAGCCAAAGGCATTCCAAAAAAATAAGTGGGCACCACATAACATTTCTGTCCAGGGAGATATTCAGGCCAAATTCTTGGCAATTGTGGCCGGTGAAGTGGTACGGGTGGAAGTGGTATGGGGGAATTGGTACAGGGGGAATTGGTATGGGGGAATTGGTACGGGGGGAATTGGTACGGGGGAATTGGTACGGGGGGATTGATACGGGGGGAATTGGTACGGGGGGAATTGGTATGGGGGAATTGGTATGGGGGGAATTGGTATGGGGGAATTGGTACGGGGGGAATTGGTATGGGGGAATTGGTATGGGGGGAATTGGTACGGGGGGAATTGGTATGGGGGAATTGGTATGGGGGGAATTGGTACAGGGGGGATTGATACAGGGGGAATTGGTACAGGGGGAATTGGTATGGGGGAATTGGTATGGGGGGAATTGGTACGGGGGGAATTGGTACGGGGGGAATTGGTATGGGGGGATTGATACGGGGGGAAGTGGTATGGGGGAATTGGTACAGGGGAATTGGTATGGGGGAATTGGTATAGGGGGAATTGGTACGGGGGGATTGATACAGGGGGAATTGGTACGGGGGGAATTGGTATGGGGGAATTGGTATGGGGGGAATTGGTATGGGGGAATTGGTACTAGGGGAATTGGTACAATCGAAGAAAGTGTCGTCGAAGCCACGTCACAGCCGGTCGCTACCATTTCCCTTCCGGAGCCCCTCACTCAGGAGTCTCTGAGACAAATAGAGCAGACGCTAGGAAGTGGGATGTTCACTGACGCAGACGCAATGGTGGCGCATCCAAGCGAAGCTGCGGCTGAAGCGTCCGTGCACGTCAAAGACCAAGCTCTCGACTTTGAGGCTCACACCATAGCATTTGATCCTTCTGTGTTCTCCACTATAACACTTCCCTCCGGAGAAGGGCTGAATCTTCATCAGACGTTAGAGACCATGGAGCAGCCGGTAGAAATCAAGGAAAAGTTTCGGAAGAAGAAGATTCACAAGTATGTCACTAACACTAGTATATCCAGCAATTTTAACTATTCCTTGAGGGTGTTCGTACTGCAAGTTCGTCTTCAAGAAGTTCTCCCATCTCAAGCCACACCTTCGCAGCCACACAGGGGAGAAACCCTTCCAGTGTATAATCTGCCTGCGGATGTTCGTCACCATGGGAACGCTAAAGGCTCATCTCCGCACCCACACAGGGGAGAAAAGTTTTTCATGTGGGACTTGCGGAGCGACCTTCACCACCAATGGATCCCTCACCAGGCACCAGTCGCTGCATTCAGATCAAAATGCGAGAGGTGTCCGTTAAGTTTCTGCACCAAGGGGCAGTGGAGGAGGCATTGGAGATCTCACGAAGCCGAGCTCATTGGCAAAGAGGCAACGCAGGAAGTTGCGCAGACTGAAGAAGTCGGACCTTCACCAGAGCCTGAGAGACCTCCGAAAACGCCCCAGCCGAGAGCAGTGAGCCAGACCAAGAGGGTTGGCGGGAGGAGGCGCGTTGGGGAAACGCCAGGGGCGGGAGTGATACGCTTGAGCGAAGAGGAGACGGCTCGTTTAGCCCTCCAGAGTCCATCACAGCCTCACCTCTCTCTGTCCGAGAGGGTCCTCATCGCATCTGCTGCAGAAAAGGAGAGGATCAGCGAAATTAACGAAAGGGAGAGGCAGCTGCAACACGCACCCAAACTGCCGCACGTCTGCTCCCACTGCCCCAAGAGCTTCCGGAAGCCATCAGACCTTCAGAGGcacatccgcacccacacaggggagcggcctttcgaatgtgacaagtgcgggaggcgcttcaccgtcaaatccaccctcgactcccaccggctcacgcatcccgaggacggccacaagcaggtgtaccaccccaagtacccatgccacgtctgcggttgcctctttgcgaccaagggaagcctcaaggttcacatgcgccttcacacagGTGCCAGACCGTTCAAATGCCCGTACTGCGAGTTACGCTTCCGCACGTCTGGGCACAGGAAAGCGCACCTGCTCACGCATTTAAGGCCCGCGATGATGGACGGGAAAAGGCGCGGGAGGAAACCCAAGGCGGTGGCAATATCCGAGGCCATCCGCTCCATGGACGCCACTCTGCAAGACAACGCGGCAGCCGAGAATCCGTCTTCGGACGTCGTGGAAGACTGGGGCACACTACAGGCTAATCTCGGAGGAGGCAGTGGTGCGTTCCAGCTGCAGCTTGAAAACGGCAGCCTCTCTCTCCAGCTGGACGAGGGCCTCCTGAGGCAGATGCAGCAGCAGGGACTGGTCCACGAAGAGGAGCCAAAGACATCAGCTGATGAGACCACGGAAAAGGTTTCGGAGCAGCTGGTGTTTGAGACTGGCGACGTTGGAAGTCTTTTTGGTTCCCCTCTTCAAGTGATCTTGGACGACACCAAACGGAGAGGCATGGAGAACGCCATGTGGGCGGACAACAGCGAACCGTTGGTGATCGACGGGGACTTTGTGTTGGAAGAGGAAGGCACTTTGAGGCAGGTCATCGGAGGCGAGTACGTCGTGGTGACGGGTCTGCAGGAGGAGAAAGTGTCCAAGCAGTAG
- Protein Sequence
- TSSAKETKTEKKVAEGEKKTEESPKAAGNNSCILTLADKAHDGSVRRYNIKVRRAGGVRWHQCTYCIKEFKKPSDLVRHIRIHTHEKPYKCNQCFRAFAVKSTLTVHLRIHSGLKSYECVTCKKKFASQSSLKVHQRLHSGLKPFSCPHCPLRFRTTGHQKAHISSHFRIRPKVKKEKKPGNEDPGMRRVLLQEPIVIKQNVEGDPSAQVVENPLPEEIVNKIAAVLPEGAVAEQMREIRPYKCEECHAAFKKQSHLRQHMRSHTGEKPFGCLSCNKAFVSRGVLRAHIKTHIPFMSPLRRPHECSECGRKFVAAGSLKRHIINAHENLRKTILKQTYLCPYCPTPPFNSNKACRKHIMTHSDELLAAQQQEQQAQQMEQQVQQIEQQVQQMEQQMEQQVQHMEEVEQHEVDDMNTLNVQNPDPVDSGMIQEEHVMEATETIVMEADDRLEAEVDSEVANNVVVTFSLNFQTADGFEQQVNNHCESFIHCYYQYLQHLLNLFLCRCSQRHSKKISGHHITFLSREIFRPNSWQLWPVKWYGWKWYGGIGTGGIGMGELVRGELVRGNWYGGIDTGGIGTGGIGMGELVWGELVWGNWYGGNWYGGIGMGGIGTGGIGMGELVWGELVQGGLIQGELVQGELVWGNWYGGNWYGGNWYGGNWYGGIDTGGSGMGELVQGNWYGGIGIGGIGTGGLIQGELVRGELVWGNWYGGNWYGGIGTRGIGTIEESVVEATSQPVATISLPEPLTQESLRQIEQTLGSGMFTDADAMVAHPSEAAAEASVHVKDQALDFEAHTIAFDPSVFSTITLPSGEGLNLHQTLETMEQPVEIKEKFRKKKIHKYVTNTSISSNFNYSLRVFVLQVRLQEVLPSQATPSQPHRGETLPVYNLPADVRHHGNAKGSSPHPHRGEKFFMWDLRSDLHHQWIPHQAPVAAFRSKCERCPLSFCTKGQWRRHWRSHEAELIGKEATQEVAQTEEVGPSPEPERPPKTPQPRAVSQTKRVGGRRRVGETPGAGVIRLSEEETARLALQSPSQPHLSLSERVLIASAAEKERISEINERERQLQHAPKLPHVCSHCPKSFRKPSDLQRHIRTHTGERPFECDKCGRRFTVKSTLDSHRLTHPEDGHKQVYHPKYPCHVCGCLFATKGSLKVHMRLHTGARPFKCPYCELRFRTSGHRKAHLLTHLRPAMMDGKRRGRKPKAVAISEAIRSMDATLQDNAAAENPSSDVVEDWGTLQANLGGGSGAFQLQLENGSLSLQLDEGLLRQMQQQGLVHEEEPKTSADETTEKVSEQLVFETGDVGSLFGSPLQVILDDTKRRGMENAMWADNSEPLVIDGDFVLEEEGTLRQVIGGEYVVVTGLQEEKVSKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -