Sstr038441.1
Basic Information
- Insect
- Sympetrum striolatum
- Gene Symbol
- -
- Assembly
- GCA_947579665.1
- Location
- OX388344.1:91519337-91533974[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.02 7.2 9.9 0.2 1 23 291 313 291 313 0.98 2 14 6.6e-05 0.023 17.7 3.5 2 23 320 342 319 342 0.93 3 14 1.7e-05 0.0059 19.6 0.4 1 23 348 371 348 371 0.97 4 14 0.00053 0.19 14.9 2.5 1 23 377 399 377 399 0.97 5 14 7.6e-06 0.0027 20.7 1.5 3 23 407 427 405 427 0.97 6 14 6.2e-05 0.022 17.8 1.1 1 23 433 455 433 455 0.97 7 14 4.1e-06 0.0014 21.5 4.1 1 23 461 484 461 484 0.97 8 14 0.00062 0.22 14.7 0.3 1 23 504 526 504 526 0.97 9 14 1.9e-06 0.00068 22.6 1.8 1 23 836 858 836 858 0.97 10 14 2.7e-05 0.0094 19.0 1.3 1 23 865 888 865 888 0.96 11 14 0.0025 0.86 12.8 0.3 1 23 896 919 896 919 0.97 12 14 4.1e-06 0.0014 21.5 4.3 1 23 925 947 925 947 0.98 13 14 0.0004 0.14 15.3 1.1 1 23 953 975 953 975 0.97 14 14 9.7e-07 0.00034 23.5 1.4 1 23 981 1003 981 1003 0.98
Sequence Information
- Coding Sequence
- ATGACAGTGTTAGAGTCGATGGCCCCTTCGGATGAGCATCATTCTGAACCTATGGTTATCTATGTACAGTCAAATTCTCAAGTCGATGGTCAGATGCTCTCTATGAATGAGGATCCCCTGGGTTTCCCAGAAGTGGGACCTTTGGAAGGATTAGGAAATCCTGGAGAGCAGATGGTTACTCTGGTGGATGATTTAGGCCAAGCACTAGGAGAAGGGCAAGCTGTGCCAATTACTCTCTCCGATATTGGTAACATAGATTTTGTGGATGGCACAGGAGCTGCATTTCAAACTGAGGATGGACAGGTACTATATTTGACTTACACAGTTGATCATGGTTCAGGAGAAAATCAGTTAAATGATGGAGTCACATTGCAAGCTAATGGTGAAGTGGACATGCTTGCGGGATTAAATGTCCCAGCATCTCAGCAGCAGATTGTGCTTGATGTTAGGGCTGGGGATGGGAATTACTTGATGCCCAGTGATGCTAATAACACCAATACGCTTCTCCCTGATAATACTGTGTCTCTGATAAGCATTCCAGAAAATAAAAAAATCGTGGGAAAGAGAGACAATCCAAAAACAAATAAGCGTAATGCTGTTGACCATAGGAAGACAACCAGAGTGATTGGACCAGAGGTGCACATAGAAGATAAGCTTCAGGTGCTTGAAGCTATGGTACCTCGAGTAGAGCGTCCTAAGAAGAAGAAGCCTGAGCCAAAATCGGTAAAGCTGAAATCTTTAGAGGAGAAAGTTGAGCAAGGCGAAAAGAAAGAATGTGAGGAGAAGTCAGCTGTAAATGAAGAGGCTGAGGAAAAATCAGAGGATACCCAGAAGGACGAGAAGGCAGCAGGTGAAAAAGAAGAAGGCCTGTACATATGTGACCTCTGTGGCAATGCATACGCTCGTGCTGCTCAGTATTATGGTCACCTTCACACTCACAGCGGAGAGAGGGACTGGAATTGTCATCTCTGTGGAGAAGTTTTCAAATCACACTCACAACTCCGACGCCATGAGTCTCGGTCACACCTCAACATGAGGCCTTACCCTTGCTCCATCTGCGGTAATCGCTTTGACCGAGCATCGCAGTTGAAGTATCATGAAAGAAGGATACATGCTGGCGAGAAACCTCATCGCTGTCTCATATGTTCTAAGGGTTTCTTTAAGAGATCTGACCTGAGAACTCACGTGAACATTCATTTGGGTATCAATAAATCCATTTGTGAAACTTGTGGAAAGCAATTCAATCATGTTTCTAATCTAATTCGACATACAAGGGTCCATACTGGAATAAAACCGTATCCTTGCAATGTATGTGGCCGAAGGTTCAGTCAGGTTAATGCTTTGCAACATCACAAGGATTCTCATAGTACGACTAGAGAATTTAGTTGTACAGTGTGCCAAAAGAAGTTCAAATCAAGTTTTATGCTGAAGAAACATATGAGGTCCTCACATGCAGACTCTTTTTCATCGGGTCAGAAAGAAGAGAAATATGTTGGTCAAAACAGAAGGTACTACTGTAACGTGTGTGGAGAAAATTTTGCCTTTTCTGTGATGCTGAAAGACCATGAATCAAAACATCTGAAAGAGACCAACTTTCACTGTAACTGCTGTGGTAATAATTACAAGTCTGCGGATGAGTTCAAAGTTCATTCTTGCAATGAAGCAGAAGACAATAAAAGTAAGGAAGAGGAGTCTCCTTCGAAAAAAGACGTGGCCAATAATTACAGTGAGCTTCTGAAGAGGATTGCAAAAGTGGTGCCCAATAAGGTCGATGATGATTCCTCAGATTTCCAAGAAGGTGGGAATGGGCTAGAATGTTGTGGGCCAGTTGTTCTAGGCGATGAACATAATGTTCAGGAACCTGTGCCGGTTTTAATTCAAAGTCAGTCTTTTATGCTAGGACTGGGTGAAAGTTCATCAAGTAAGAATGAAGTTGTAGAAGTGAACAAGTCAGATGTCAAGGGAGAAAATGTGGTTGCAAGTATGAACACAGCTAACAAAGTGTCTGAGATTTGTGGTGAGTTTAAAATTTTACGTCCTGGAGACATTGATTCCGCTTGGATTGTCGATTCAAATGTCATGGCGTGTGAACCTCATTCAGAAGGAAAGTGGATGACGCTGCCTCACCAAGGAGAATCGGAAATTGTGATTTATGTCACTCCTGACCTGCATCGTGGTGTTGATGTTGAAATGAAGAAAGTGGCCCTCCCTTCTGCTGCTCCCAACTTTAAGAAAGAAGAAATACATATGAACAGTGGTTTACAAAGGAATTCAGCAAATATTAGTGTTACATCCCCAGTTCTTGATGAAGAGGGATGTATAAATATAAAAGTACAAAACAGTGCAAATGCTCCTGAGAATTTACCATCAAATCCAAGTTCTCTGGGGGATACTGAGTTGATGGAAGATCCATTTACTGATATAGCAAATGAAGAAGAGAAAAAAAATGCTGAATTGGCACTTGATCAAATTGCGAAAGAGAAGGGTAAACCACTTCCTAAAACATTCAAATGTAAAGAATGTGGAAAAGTATTTTACAAGAACAGTAACTATAAACAACACTTAGGAATCCATTTTGTTGACCTTCAGAGATATCAGTGTAAACTTTGTGGGCGATCGTTTGCATGGAAGTCTACTTTGAACAAGCACATGACTAATTCACATCAAACGGGTCCTACTCCTAAGTTTTCTTGTGGCTTCTGTGCAAAGGAGTACGCCACAAGTTCCCAAGTGCAGGAGCACATTAAGAGAGATCACTACAAAGAAAGGCCGCATACATGTGATGTTTGCAACAAAACATTCTACAAGAAGTATGATCTGAAAATACACCTAAGGACCCACACGAAGGAGAAGCCTTACATTTGTGGTGCTTGTGGTAAGGCTTTCTATCATTTGTCACACATAATTCGTCATGAGAGGATACACACCGGAGAGCGCCCATACAAGTGTGATGATTGTGGCAGAGAATTCAATCAATCAAGTTCTCTCAAGACACACAAAATTCGACATTCCAATTGCTCTGCTTCAGCAAACAAATTGGATGCAAGTACCAAGGTATTGATTGCTGATGAGAATTTGACAATTCTTAATTCACTGTCAGAAACTATGACAAAAATCAGATCTCCTAAGAAAACTGCTGGAGTTCATTCTGTTGAACCAGAGTTAAATATTGACATTCTTTCTTCAAAAGATGCTAACCTCAGTTTTGAAAGCATTCCCTCATCTTATGAAGGCATCACATCTTGA
- Protein Sequence
- MTVLESMAPSDEHHSEPMVIYVQSNSQVDGQMLSMNEDPLGFPEVGPLEGLGNPGEQMVTLVDDLGQALGEGQAVPITLSDIGNIDFVDGTGAAFQTEDGQVLYLTYTVDHGSGENQLNDGVTLQANGEVDMLAGLNVPASQQQIVLDVRAGDGNYLMPSDANNTNTLLPDNTVSLISIPENKKIVGKRDNPKTNKRNAVDHRKTTRVIGPEVHIEDKLQVLEAMVPRVERPKKKKPEPKSVKLKSLEEKVEQGEKKECEEKSAVNEEAEEKSEDTQKDEKAAGEKEEGLYICDLCGNAYARAAQYYGHLHTHSGERDWNCHLCGEVFKSHSQLRRHESRSHLNMRPYPCSICGNRFDRASQLKYHERRIHAGEKPHRCLICSKGFFKRSDLRTHVNIHLGINKSICETCGKQFNHVSNLIRHTRVHTGIKPYPCNVCGRRFSQVNALQHHKDSHSTTREFSCTVCQKKFKSSFMLKKHMRSSHADSFSSGQKEEKYVGQNRRYYCNVCGENFAFSVMLKDHESKHLKETNFHCNCCGNNYKSADEFKVHSCNEAEDNKSKEEESPSKKDVANNYSELLKRIAKVVPNKVDDDSSDFQEGGNGLECCGPVVLGDEHNVQEPVPVLIQSQSFMLGLGESSSSKNEVVEVNKSDVKGENVVASMNTANKVSEICGEFKILRPGDIDSAWIVDSNVMACEPHSEGKWMTLPHQGESEIVIYVTPDLHRGVDVEMKKVALPSAAPNFKKEEIHMNSGLQRNSANISVTSPVLDEEGCINIKVQNSANAPENLPSNPSSLGDTELMEDPFTDIANEEEKKNAELALDQIAKEKGKPLPKTFKCKECGKVFYKNSNYKQHLGIHFVDLQRYQCKLCGRSFAWKSTLNKHMTNSHQTGPTPKFSCGFCAKEYATSSQVQEHIKRDHYKERPHTCDVCNKTFYKKYDLKIHLRTHTKEKPYICGACGKAFYHLSHIIRHERIHTGERPYKCDDCGREFNQSSSLKTHKIRHSNCSASANKLDASTKVLIADENLTILNSLSETMTKIRSPKKTAGVHSVEPELNIDILSSKDANLSFESIPSSYEGITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -