Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00011 0.12 14.7 0.1 2 36 8 42 7 49 0.89

2 4 6.3e-10 6.8e-07 31.6 0.0 4 42 60 97 58 100 0.89

3 4 0.0033 3.6 10.1 0.1 6 36 120 150 115 155 0.88

4 4 7.9e-10 8.5e-07 31.2 0.0 2 38 177 213 176 218 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00011	0.12	14.7	0.1	2	36	8	42	7	49	0.89
2	4	6.3e-10	6.8e-07	31.6	0.0	4	42	60	97	58	100	0.89
3	4	0.0033	3.6	10.1	0.1	6	36	120	150	115	155	0.88
4	4	7.9e-10	8.5e-07	31.2	0.0	2	38	177	213	176	218	0.92

Coding Sequence: ATGAAAAACATAAAGCGCAATGAGGAAGCTCTGAGCGAAGCGCTTGCAGAATTGAGAAGGGGCCGTCCGCTTATTGAAGCAGCAGCTGCCCATCATATCCCTCGGTCCACTCTGTACGTGCGAGCACGCAGCAGTGGAATACAACTTCCCTTAATTCGCCAGGAATATCCAGGAGAGATGATCAGTGCTGCTGTTCAGGCAGTCCAAGGTGGTTCTAGTCTGAAAAGAGCATCAGATCATTTCAAGATACCAAAAACTGTGCTCTGGAGGAAAGTTCAAAGAGAGTTGGAGAGTGGAAATCCTCAATTGAAGAAAATTGACAAGTCCTTGAGAAACCCATACACAGCAGAACAACGGCAGGCTGCCATTGATGCTCTAATCAGAGGAGATAGCATAGCCAAAGTTTATCGGGAATATCAGATTTCAAAAACTACACTTTTTCGCGAGAGAGCTCGTTTGATAGCAAATGGCCGCATTCCACCAGTTGCTCAACGTGGTGAAGTTGTGATGAAAAGGGGAAATCCTAATCATGAAAAACTTGATTTAGCAGTGGCCGCATGCCAGAAAAGGGGGATGACACATGCCCTTGCTGCTCTCACTTACCAGGTTCCTAAAACAACATTATGGCGGAGATTACAACAGCTCCGTAAAAAGTCGATGGAAGGTTGTTCAGAAGATAGTGGTAATGAAGATGTGAGTGGAGTGAAGGATGAAGATGTGGAAGAAGTGAAGGCGGATGAGGTGAAAGACGATGATAAAGAGTGTCAAGTAGAAGACCCTTTGGAGGTGGTGATGGAGGGCGAAGTGACTGTGAAAGAAGATGGCACGGTATCTTTTGTGGCAGCAGATGGAACAACTGATGAAGGACTTCAGTTCCCTCCTGATAGTACCCTTATCATCCTCACAACCTCCCTTCAGGAAGGAGAGCATATTATCGTTGAAACGGATGAAACGGAGAAGGAGATTTTAAGCGAGGATTGA
Protein Sequence: MKNIKRNEEALSEALAELRRGRPLIEAAAAHHIPRSTLYVRARSSGIQLPLIRQEYPGEMISAAVQAVQGGSSLKRASDHFKIPKTVLWRKVQRELESGNPQLKKIDKSLRNPYTAEQRQAAIDALIRGDSIAKVYREYQISKTTLFRERARLIANGRIPPVAQRGEVVMKRGNPNHEKLDLAVAACQKRGMTHALAALTYQVPKTTLWRRLQQLRKKSMEGCSEDSGNEDVSGVKDEDVEEVKADEVKDDDKECQVEDPLEVVMEGEVTVKEDGTVSFVAADGTTDEGLQFPPDSTLIILTTSLQEGEHIIVETDETEKEILSED

Sequence clustering based on sequence similarity using MMseqs2