Basic Information

Insect: Symmerus nobilis
Gene Symbol: ush
Assembly: GCA_027564815.1
Location: JANTOP010011116.1:8005-15415[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.029 1 10.0 0.1 1 20 204 223 204 225 0.91

2 9 0.00053 0.019 15.5 2.1 1 23 271 293 271 293 0.98

3 9 0.048 1.7 9.4 1.4 2 21 322 341 322 342 0.92

4 9 0.074 2.6 8.8 2.6 2 21 704 723 703 724 0.93

5 9 0.014 0.48 11.1 0.0 3 21 773 791 771 792 0.91

6 9 0.008 0.28 11.8 0.1 1 23 832 854 832 854 0.98

7 9 0.017 0.61 10.8 1.5 1 23 860 882 860 882 0.99

8 9 0.0035 0.12 13.0 2.2 1 23 937 960 937 960 0.94

9 9 0.32 11 6.8 0.5 2 20 1091 1109 1090 1111 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.029	1	10.0	0.1	1	20	204	223	204	225	0.91
2	9	0.00053	0.019	15.5	2.1	1	23	271	293	271	293	0.98
3	9	0.048	1.7	9.4	1.4	2	21	322	341	322	342	0.92
4	9	0.074	2.6	8.8	2.6	2	21	704	723	703	724	0.93
5	9	0.014	0.48	11.1	0.0	3	21	773	791	771	792	0.91
6	9	0.008	0.28	11.8	0.1	1	23	832	854	832	854	0.98
7	9	0.017	0.61	10.8	1.5	1	23	860	882	860	882	0.99
8	9	0.0035	0.12	13.0	2.2	1	23	937	960	937	960	0.94
9	9	0.32	11	6.8	0.5	2	20	1091	1109	1090	1111	0.92

Sequence Information

Coding Sequence: ATGATAAATGATAAAGGGCATCATATGGATGGATGGGATAAGGAAGGCGAAAGTAGTCCACCCCCAGCCCAACTACCGTTGAAACATAACGATAACGGTCGTTCCTCGTCGGCCGACATCCGAAAATCAATATCACCAAATTCAATTGAGACCGGTTCGCAATCGCTATCAAATTGTAGTTCACCATCGCCGAATCCGTCACCAACAGCGCTACCGCCGCCCCTACCACTACTCCTAACCAGCGAAATGTTGTCGAACGTCCAAAAGCAACTGCCGAAACTTCGATTGAATACGATACTTGCATCCGATCCCGCCTTGCAACCGGAAGCAAAAGATATATTTTTACGCTCGTCAAAAAATAGTGATAGCAAATCGCCAGCATCAATAAAAAGTTGTATGGATGATGATAGTGGCGGGGACTTGGAACCGGTCCAATTATCATCGGATCGACTTCCGAAACAGTATGTAATATCAGATGGGAATTTACCAGTTAATGTTCCATCCAAGTCCCGGCCACCATCCGTTCATTCAGTGAATGCAAAATCATCGTCAACGGTCGGTGGTACATCACAACCTCCTACCATTGAATTAATTCCTAGAATACCAATATTTTCCTGTCTACCATGCGGCATTAAATTCTCGTCCCTATCGACACTTGAAGCCCATCAAACCTACTACTGTACGCATAATCGTAAGGATCAACCAGACGATATGAAAACCGGTACGAAATCGACAACTGGTGATGAAGATGGATCATTAACAATTAATGACAGTGAGCCCCAACCAAAAAATATTAAGACTGGCAAGCAATATGCATGCAGCCATTGTTCCTATAGCGCTGATAAGAAAGTCTCTCTAAATCGTCATATGCGAATGCACCAATCGTCACCATCACCAACACCGTTAGCAGCAACGAATGGGGATGAGTGTTCTTCTAGTCAGCAAATTCATCAAATTGATCGGTACTGTACGGAGTGTGATATTCGATTTTCTAGTACAAAGACCTATCGAGCCCATAAACAGCATTACTGTAGCGGTAGACATAGAGATGGAAATACACCGCAAGCGCAAACTTTCACCAAACAACAAGTGACGGCTAATAGTAAAATTGATTCACAGAGCCCGTCGGAAACGACGACCAGCCCACCGAATGTATCAACCCCAACGCAACCGTATTTTGCTCTACCAACTACTCCTGTGCTAATTATCCCGTGTTCGTTAATTCAGAGAGCTAGCATATTACCAGAACCTTTGTCAATGTTATCGCCTGGACTTCACGATTCCGATTCAATATGTTACACATACCAAAACGGCAAATTCAAGCCAATCGCAAATTTAATAAATGCGACAGCTGAGCATTCAAAACCAAGGCAACAGACACCAAATCCCCTGCATGCAGAACCAACCAAAATAAGTGTACAGCAATCACCACAGACGATTAAAGATTCAAGTTCCACGCAAAAATCAACGGAAATTTTGAAGTGTATCCGAAAGAAAGAAGTTATGGATCAGGATTCGAGTCCAGCGGCCACCGGTTCGATTCCCATTACCTCACCACTCGATCTATCAATTCGACGACTTCCAAACGATAACCAACATCTAAGAGAGCGATCCCACTCCCTATCATCGAATGTGTCTGGTGATCATTACTTGAACAGTCGTCTCAATCTGGAACTGTTAATGGAAAGTAAGGAGAACTTATCGTTAGGTAGTTCAGGAGATTCGGTAACTCCGGAACAAATAGTATGCGCTCCATCACTTCCCGGCAGTCCACCATTAACACCATCACCAAAACGGACCGCTCACAGTCCCAGAGTTATTTTATCCTCATCACCGATCCCCTCACCAAATCTCCTACAACCAATACCGGCCGCAATGCTTCGACCGTTACTACCCAAAGAACTAGTCGCCCGACTCACCGATCCTGCCATTAATATAAACACATCATCCTCATCCTCTGCATCGAATATCCAATCGATCGATCCAAATATGATTCTTACCCATAAAGCAATCGTTAATGTTGTAACGTCGAATAAGAAAACATCCAATTCAACCGGGCACCATCAAAATCTACAGCAACCGCAAATTTTTGTGAAGCAAGGCGTTTCGAAATGTAAGGAATGTAATATCGTTTTTTGTAAGTTAGAGAATTACTTGGCCCACAAGCAACATTACTGTTCGGCACGAATAACCGAGGATAAGGATGAGAGCGGTAGATCGACCCCATCAAAACCAGATTCATCCGTATCAAATCTGTTACAAAAATCTGCAACGCCTACCACTACCGGTACAACATTAGCTTATCAACAGTTAATTTGTGCCGCATGTGGCATTAAGTTTACATCATTAGATAATTTAAGCGCCCATCAAATGTACTATTGTCCGAAGCGGATAGAACTTCCCGTACAAGTTTCAGCTCATCCGAAGGATAAATGTTTGAAATGTAAGAATATTCATGAATCGGGACAATCATGTCCGGTTACCGCTGTGATCCATAAATGTCCTATTTGTGATGTTATTAGTAATAACGCCATTGAGGCTCGCCGTCATATGGATACTCATGCGGGAGTTAAGGCTTTCAGATGTTCAATATGTCGATATAAAGGAAATACGTTACGTGGGATGCGAACCCATATTCGTACTCATTTCGATAAGAAAACATTGGATATAAATGACGATCACTACATCTCATGTATATTAGAAGATGAGGAGTCCCTATCGCCATCCATAAATAATACGTTGAATGCGACCACAAACCACACTTCCAATACTCAATCGATAGAATCAGCTACCGTTCAAATGTTGATGCATTTTTGTGATAAATGTAATTACTCGTCTAGCTATAAGGGAAATGTGATTCGGCACATGAAACTTGTACATATGGAAAATTCCATCCATCCACAATCTTCATCACCGAATTTCGGTGAAGGTGGTGAAAGTTTAATATACGAAGATGAATCTCAAAAACAATCATCATCTGCGGCTAATGTAACAATTAAAGTTGAGCCAACTGATGACGATAAGACTGATGAATTACAAATAATAAAAATAAATGATATCCCTAACATATCCAATAGTAATAGTACATTAAAAATAGAATCAACAATCCAAGACATTAAATATTTTAAGGATATTAAAATAGATATAACGGATACATCCAATCTAACTACCGAACCGATTATCGGTCAAAAGGCTGTCATTGAATCGACGGTTGTCACACCACCAAATCCATCAACAAAAGGATTGATACCACTTACATCCGAACAGAAATATTGCAGTGATTGTGATATAAAATTTAATTATATGAATACATTTATTGCCCATAAGCAATTCTACTGTAAAGGAGTTAAACATGATTTATCGGATAAACCGAGCAGTCCAATCGTCTCTAAGTCACCATCCAATTCAGTTGTATCGCCATCACCAACAACTATTGTTAGCCGGCCAACTGAAACATCCGTTTAA
Protein Sequence: MINDKGHHMDGWDKEGESSPPPAQLPLKHNDNGRSSSADIRKSISPNSIETGSQSLSNCSSPSPNPSPTALPPPLPLLLTSEMLSNVQKQLPKLRLNTILASDPALQPEAKDIFLRSSKNSDSKSPASIKSCMDDDSGGDLEPVQLSSDRLPKQYVISDGNLPVNVPSKSRPPSVHSVNAKSSSTVGGTSQPPTIELIPRIPIFSCLPCGIKFSSLSTLEAHQTYYCTHNRKDQPDDMKTGTKSTTGDEDGSLTINDSEPQPKNIKTGKQYACSHCSYSADKKVSLNRHMRMHQSSPSPTPLAATNGDECSSSQQIHQIDRYCTECDIRFSSTKTYRAHKQHYCSGRHRDGNTPQAQTFTKQQVTANSKIDSQSPSETTTSPPNVSTPTQPYFALPTTPVLIIPCSLIQRASILPEPLSMLSPGLHDSDSICYTYQNGKFKPIANLINATAEHSKPRQQTPNPLHAEPTKISVQQSPQTIKDSSSTQKSTEILKCIRKKEVMDQDSSPAATGSIPITSPLDLSIRRLPNDNQHLRERSHSLSSNVSGDHYLNSRLNLELLMESKENLSLGSSGDSVTPEQIVCAPSLPGSPPLTPSPKRTAHSPRVILSSSPIPSPNLLQPIPAAMLRPLLPKELVARLTDPAININTSSSSSASNIQSIDPNMILTHKAIVNVVTSNKKTSNSTGHHQNLQQPQIFVKQGVSKCKECNIVFCKLENYLAHKQHYCSARITEDKDESGRSTPSKPDSSVSNLLQKSATPTTTGTTLAYQQLICAACGIKFTSLDNLSAHQMYYCPKRIELPVQVSAHPKDKCLKCKNIHESGQSCPVTAVIHKCPICDVISNNAIEARRHMDTHAGVKAFRCSICRYKGNTLRGMRTHIRTHFDKKTLDINDDHYISCILEDEESLSPSINNTLNATTNHTSNTQSIESATVQMLMHFCDKCNYSSSYKGNVIRHMKLVHMENSIHPQSSSPNFGEGGESLIYEDESQKQSSSAANVTIKVEPTDDDKTDELQIIKINDIPNISNSNSTLKIESTIQDIKYFKDIKIDITDTSNLTTEPIIGQKAVIESTVVTPPNPSTKGLIPLTSEQKYCSDCDIKFNYMNTFIAHKQFYCKGVKHDLSDKPSSPIVSKSPSNSVVSPSPTTIVSRPTETSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -