Snob013751.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010033338.1:21938-23654[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.52 18 6.1 0.5 2 23 185 207 184 207 0.96 2 10 0.03 1 10.0 0.0 2 23 214 235 213 235 0.89 3 10 0.0016 0.055 14.0 2.3 1 23 241 264 241 264 0.95 4 10 4.4e-05 0.0016 18.9 1.6 1 23 269 292 269 292 0.98 5 10 5.9e-05 0.0021 18.5 1.3 2 23 299 321 298 321 0.96 6 10 0.51 18 6.1 1.1 3 23 329 350 328 350 0.95 7 10 0.79 28 5.5 0.3 2 23 358 380 357 380 0.93 8 10 0.00073 0.026 15.1 6.1 2 21 388 407 387 410 0.93 9 10 2.8e-06 9.9e-05 22.7 2.1 1 23 415 437 415 437 0.98 10 10 3.9e-05 0.0014 19.1 1.8 1 23 444 467 444 467 0.98
Sequence Information
- Coding Sequence
- ATGGATACAAAAATATGTATTTTATGTTTAAATAATTCCGATTCCGAAGATTACCAATCCTTGTACCCAACAAAAACCGGAAATGAAAGTTTGACCGACGTTTTACGGTTACATTTCTGGGAGATAAATGAACGGATAATTATTATATGCAAATCCTGTTTAGAAAAGGTCACCACTTTCCATGAATTTTATTTGGAAGTGCGAACAATTCACGATCAATTTAAGGAACAGAAATTAGCGAATACTTTTTTCTGTGAAAATATTATCAAGGAAGAACCGGAACCGGAGCTCTCTATAAACAATTTATCAGATAATGTTGATTATAATACGACGGAAACACCGGACGAACAGAATGAAACTAAATTTGATGTAAAAAAAGGTGTCGGTAAATCGGATATGGAAGAAAGTCCAAAACCAAGTTCTAGATCCAAAAAAGTGAGGAGAAAACCATCCCATGAATTAACAACTAAAAAATCGAAAGATCCGAAACCGGAGAGTTGGAAAGTAATTTTAGAAAAGAATTATGATAAATTTTTACTTCGATTCTCAATGCAATGTCAATTATGTTCGGTATCCCTTCAATCATTGGACGAAGCCCGAAAACATTACCGTTCCCAACACAATCGTAAAGGTTATTTGATGTGTTCGGATTGTGACCGGCCGTTTTCCGATTACGGACGAATTGTTGATCATTTAGAATGGCACGACGATCCAGAGAAATTTATATGTACAACATGTAATAAAACATTCGTAGACGGTACGTGTATGAGGAAACATATAAAGGAAATCCATGCCGCTAGAAGCTATAAATGTGATCAATGTGACATGACATTTACACGTCGGAACCCTTTCGTATATCATATGAAGACCATCCATCCAGAGAACGAAAATATAGAGTGTAATCAATGTCAAAAGAAGTTTAAAATCAAGGAATCATTACGGTATCATATACGGAAAGTTCATGAAAATTCTGATTCCCGTATATGTGACATATGTGCGAAATTCTTTAAATGTTCCAAAGCGTATGAACTTCATTACAAAGTCGTTCATACGAATACAATGCAAAAGGTGAAGTGTGATATATGTGGATCATGGTTAAAACATGTCGGTATGCTGAAAGAACACATGAATTGGCAACATAAACGACAAAATATACCACAAACATGTAAATATTGTGGGAAAACTACAACGAATCGTAAATCGTTAATGAATCACATTCGATGTCATCATTCAAACATTTCCTACACATGCCACATTTGTGATAAATCTTTTAAGCAAACGTTAACattaaaggaacatatggctatacattcgggcaacaaggaactgtatacatgtagtttttgtccgagaacatttcggtcaagagctaacatgtatgcgcatcgaaagaaagcccatccgatcgaatatgaacaatccaaacATCTTAAAATGGATGGAATTGATGTCAAAACTAGTGTTTAA
- Protein Sequence
- MDTKICILCLNNSDSEDYQSLYPTKTGNESLTDVLRLHFWEINERIIIICKSCLEKVTTFHEFYLEVRTIHDQFKEQKLANTFFCENIIKEEPEPELSINNLSDNVDYNTTETPDEQNETKFDVKKGVGKSDMEESPKPSSRSKKVRRKPSHELTTKKSKDPKPESWKVILEKNYDKFLLRFSMQCQLCSVSLQSLDEARKHYRSQHNRKGYLMCSDCDRPFSDYGRIVDHLEWHDDPEKFICTTCNKTFVDGTCMRKHIKEIHAARSYKCDQCDMTFTRRNPFVYHMKTIHPENENIECNQCQKKFKIKESLRYHIRKVHENSDSRICDICAKFFKCSKAYELHYKVVHTNTMQKVKCDICGSWLKHVGMLKEHMNWQHKRQNIPQTCKYCGKTTTNRKSLMNHIRCHHSNISYTCHICDKSFKQTLTLKEHMAIHSGNKELYTCSFCPRTFRSRANMYAHRKKAHPIEYEQSKHLKMDGIDVKTSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -