Snob011542.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- hang_2
- Assembly
- GCA_027564815.1
- Location
- JANTOP010003085.1:4911-8267[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00031 0.011 16.3 0.8 2 23 207 229 207 229 0.95 2 14 0.65 23 5.8 3.3 2 22 316 336 315 336 0.93 3 14 0.54 19 6.0 0.8 3 21 346 364 345 365 0.95 4 14 0.41 15 6.4 0.3 3 22 406 425 404 427 0.85 5 14 3 1.1e+02 3.7 0.3 2 20 439 457 439 459 0.93 6 14 0.21 7.3 7.4 0.1 2 23 467 489 466 489 0.91 7 14 5.4e-05 0.0019 18.6 0.6 3 23 550 571 548 571 0.95 8 14 9.2e-06 0.00033 21.1 0.3 1 23 579 602 579 602 0.97 9 14 0.11 3.7 8.3 0.1 1 23 614 637 614 637 0.97 10 14 1.7 61 4.5 0.4 1 23 640 662 640 662 0.95 11 14 0.0015 0.053 14.1 2.4 1 23 666 689 666 689 0.95 12 14 0.035 1.3 9.8 2.5 2 23 810 832 809 832 0.96 13 14 0.0039 0.14 12.8 0.8 2 23 841 863 840 863 0.95 14 14 0.0003 0.011 16.3 0.4 1 23 902 925 902 925 0.95
Sequence Information
- Coding Sequence
- ATGCAGTTCAATTTGAGGCAAATTTTACAAACTGATCGTATATCGCTACGAGTATGTCACGCATGCATAAGTTATTTAAATTCATGGCAAAGTTTCAAGAATCGATGTATGGCCGCCCAGAAGAAGCAACGTGGCCTACTAGAAATTTGGCTGAACAAGGAACGGACCCGACAAAAGATGCTTGCCACCAATTTGCAACAGCAACAATTTGAAAGGCAACGACATTTGGCGCAACAACGGTCGCAACTGGCGCAGCAGAGAATCTTAAAGCAAGCGCTCAGCCAACCAAGTAATCAATTGGAGTTTGCGAGCGTTAAACAGGAACCGGAAGAGATGACAAGCGATTTAGAAAATATTGACGATGATGATAAAATGGTGTTGGATCCAACGCAATTTTTAGCAAGGGACGACGATGATGATGGGGATGATCGAGATGAGGATGGTAGTGTGACTGATAAATCATACAGTCGACAGGGCGGTCCGCCAATACTAACATCACTAGGTCTTACGCATATTAATCATGTGAATCCATTTAATTATTTGAGCACGGAATTGGGTCCCAATGACAGTCAAACAGATGAAAATGATTCGGTACATCCGTCAAATCGCCCATTACCCTCGTGCACTATTTGTAATATGACCTTTTCAAATCGGGCAAATGCTCGCCGGCATGAACGTAACATTCACGGTAAGAAAAATATACAAATTAGTACAAGTCCAAATCATAGCATTACGCTGTCCACGGTTGCTCCAGCGCCCGTTTCTATTTCGCTATTGAACCGTAGCCTACTATTGCCCCGACGAAAATTAATAATTCCACCGTCATCAGAACAAGCGATCCTCTTCAATTACGACAAACCGGAACAGTATCGGAGTCTGTTGACCGATGCGAAACTACATTGGATCCGACGACACATTGAATTCCTTGAACAATATCAGAATATGAGGTGCAAGTGTTGCAATAAAGATTTCCCAACGTACAAATTTTTTATGGCGCATATGCGAAAGAAGTACGACACGCTGTCGAGAAATTTGTGCTTCAAATGTTTACGGCAATTCCAAAGTAAAGCACAATTCATTGCCCATTTAAAGAAGAAGAACTGTCTGAATTTGTTCAAGGTATTTATGGCGGACGATACAATATCAAAGGAACCAATACCGCCACCACCACCGCGCGGTGGTGCCAAAGAGGTGCTATCCAATAAAATGTACGGTTGTAAGCTGTGTACGAAAACATTCCGGTTGAAAATGGATGTCCGTGGGCATGTGTACGAAGCGCATCCCGACAAACAGAAGAAGGAAGGGCCGCCGAATACATGCGGATTTTGTGAAGCGAAATTTGAAGATTCAGGCTTTCGAAAGCGACACATCAGCAATATGGAGTGTTTGGTGTTTTTAATTTGTGGCACTTGCAATGAACGCTTCGACACAAATCCCGCTTTCGTTGATCATGTTTATTCGACACATTTACAGGTTCCGGAAGAGGAACCGAACGGTTTGGAGGAGGAATCAAATGTGGAACTGACAGCTGATTCAGTTAATATATCCAACGAATTGGATTCAACTGGAGTTAATCAAAATGATTCACTAACAGCGGGCCTATCGCAACCGAATCGAGTTCAAAGTAAAGGTCGCACACCACAAAATTGTACCGAATGTGGTAAACAATACAATAATTGGTACAATGTTTTGCGACATATGGAATCAAAGCATCCGGATAAAGTTCCGGCTATTTATCGGTGCGAAACGTGTAACATCGGATTTCCAAGACAATCGGAATTGCGTGACCATATGCAATATGTGCACGGCGAAACATTACCGAAATTGAAACGGGAACTGTTTCAGTGCCGCATGTGTCCGATAATGGTTGATAGTCGAGAGTTATGGATTGAACATATGAGTCGTACGCATAGTAAGTTCTTCTGTAATCTATGTGAATTTGAATCGGAGGATAAAGTCGGTTTTCAAATTCATTTGACGAATCATGGCCGTCAACATAAATGTACAATTTGTAAGCATTCATTTAATTCGGAACGTGGCCTCGAAACACATTTAGCCGTTATGCATGGCTTGAAGAAGGATCAAATGCCACCGGAAAAGGATGATGATGATGATGAATCGGCTGCGAGTCGTCCAATTAAAATTGAGGCGACCGTAGACATACCGATGAACGGTGGTAATGATGAGGAGGATGATTTGGAAGGGATGGACGATGAGGATATCGACGACGAAGCATATGATGAATTATTGGAGGACGGAAATGTGGCCGATAACGATGAGACGTTAGATTTAGAGAATCCGTTAAAGAAAATTAAATTGGAGCCGGGATTAATTCGGGTGAAGCAAGATTTAACGAGCCGTGGCGTTACATTGACCAGCACTTCACCGAACATTCGTTTCGGCCCATCGAAAACACATAGCCGACTACGTTGTCGTATTTGCCAGAAGAGAATTCACACGAAAATCGGTTACAAGCGACACATGTTAACCGTTCATCAAGTGCAGGACTGTGTTTTCATGAAGTGTACATTGTGCACAGCGGAATTTAGCAACGAAAAGGGATTGAAAGTGCACATGTTTCGAACACATCAAATAACCGTACAACAATTACAGGAAAATGATCTGTTGATGCCCGAACCAAAACAGGAAACCACTTCAAATATACCGTCAACTAGTATAACGGTTACATCGAAACCCCCTGTCTTTGAATGTGACATTTGTCATACCGTATATCGGGGCAAGGAACAATTAAAAGCGCACAAAGCGGTTGTGCATGGTGATGGGTGA
- Protein Sequence
- MQFNLRQILQTDRISLRVCHACISYLNSWQSFKNRCMAAQKKQRGLLEIWLNKERTRQKMLATNLQQQQFERQRHLAQQRSQLAQQRILKQALSQPSNQLEFASVKQEPEEMTSDLENIDDDDKMVLDPTQFLARDDDDDGDDRDEDGSVTDKSYSRQGGPPILTSLGLTHINHVNPFNYLSTELGPNDSQTDENDSVHPSNRPLPSCTICNMTFSNRANARRHERNIHGKKNIQISTSPNHSITLSTVAPAPVSISLLNRSLLLPRRKLIIPPSSEQAILFNYDKPEQYRSLLTDAKLHWIRRHIEFLEQYQNMRCKCCNKDFPTYKFFMAHMRKKYDTLSRNLCFKCLRQFQSKAQFIAHLKKKNCLNLFKVFMADDTISKEPIPPPPPRGGAKEVLSNKMYGCKLCTKTFRLKMDVRGHVYEAHPDKQKKEGPPNTCGFCEAKFEDSGFRKRHISNMECLVFLICGTCNERFDTNPAFVDHVYSTHLQVPEEEPNGLEEESNVELTADSVNISNELDSTGVNQNDSLTAGLSQPNRVQSKGRTPQNCTECGKQYNNWYNVLRHMESKHPDKVPAIYRCETCNIGFPRQSELRDHMQYVHGETLPKLKRELFQCRMCPIMVDSRELWIEHMSRTHSKFFCNLCEFESEDKVGFQIHLTNHGRQHKCTICKHSFNSERGLETHLAVMHGLKKDQMPPEKDDDDDESAASRPIKIEATVDIPMNGGNDEEDDLEGMDDEDIDDEAYDELLEDGNVADNDETLDLENPLKKIKLEPGLIRVKQDLTSRGVTLTSTSPNIRFGPSKTHSRLRCRICQKRIHTKIGYKRHMLTVHQVQDCVFMKCTLCTAEFSNEKGLKVHMFRTHQITVQQLQENDLLMPEPKQETTSNIPSTSITVTSKPPVFECDICHTVYRGKEQLKAHKAVVHGDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -