Snob016949.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010014642.1:1-4217[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0094 0.33 11.6 0.6 1 21 378 398 378 399 0.94 2 9 0.061 2.1 9.0 2.9 2 23 474 495 473 495 0.97 3 9 0.0078 0.28 11.8 1.5 2 23 501 523 501 523 0.95 4 9 4.4e-06 0.00016 22.1 0.3 2 23 528 550 527 550 0.94 5 9 1.9e-05 0.00068 20.0 5.9 1 23 556 578 556 578 0.98 6 9 0.39 14 6.5 0.1 1 21 584 604 584 605 0.89 7 9 9.6e-05 0.0034 17.8 3.6 1 20 624 643 624 646 0.96 8 9 6.1e-05 0.0022 18.5 2.0 1 23 654 677 654 677 0.92 9 9 0.00021 0.0073 16.8 1.8 1 23 683 706 683 706 0.93
Sequence Information
- Coding Sequence
- ATGGATATTAGTTATCGAAGATGTTCGGTTCCTAACTGTCGTATGTCGAAACGGAAAATACCTGGACTTCGATTATTTACTGTTCCAAAAAGAAATAAAGATCTCCGTTCTCTTTGGATTTTCAAATGTGGCCTTAACAATAGCAACAATTTAAATTTGTACGTTTGCGAGAGACATTTTGACAAGAGTCTTATTGGGATTAAACGTTTAAAAGACGGGGCAGTACCATCATTATCGTTGCCATCCCGTACTTTCCCAAATAAAAATGTACCACTTTCTTCACCTATATTATCCGAAAATGATCCCGATGAATTATCCACCCATTCAGGAATTATTGAAGGAAATCAGCAGACAGAGCAGATTATGACAAAGGATAAGGAGAACGATCCGGATGTGCCTAAATTAAATACAACCAAAGTGAGGAGACCTAGAAATTCGAATGGTATCGATGAAAAATCGATTAAAATCAAGGTTACGACTATGATATCGAAACGAATTACGGAATTGGATAAGCTTCTGAAGAATATTCTCAGAAACAATGTTTCCATTGCCGAACAACAACTTTTTTTGGAGTATAATGAAAGACCGGACTTTCCATCACTACAATGGATTGAGCCAACAACAAATTCGGCTACTGATTTAGAGCAAACTTGTCGTGTTTGTGTTCATATCATGACGCCACTTGAAAAACGGGTCAGTTTGTTTCCCGACACGACTGGAAATAATTTAAATACCGATTTTAGAGAATTGAACAGCATGAATTTGAAGATATATCGAGATGATGGGCTTCCACAGAATATTTGTGCACCTTGTGCCACCCGATTAGAGCAATTTAAGGGATTTCGTTTACAGGCAACTAGAGCTCAATACATTTTACAGGCTTATTTCGATCGAACTGTTAAGACAAATGATTTGGATGATTCGTTAGATCCATATCTACATATGGGCGATACGGATATTGAATTCTTAAAAGTGGAATCAATCGATATGTTGGATTCGGATGAACGGAATCCTCCGTTAGAGAATACTGGAATCAATAAATTTTTAAATCAAAATGATAAAGATAATGAATCGAATGACGAAATTGATATCAGTGAATTCGAAGTTGTTAATTCCGGTCATGATTTGAGATATAAATGTAACGTATGTGAAAGAACGTTTAAGGAATTCATAAAGCTGTTGGACCATCGAAAAATATGTAAGATACCAGATTCGGAACCGGAACCAGAACCAAACATATCCGTTCCAGTCgatcttgttgaggaacagggaaatgatgatgattcatgctcagatgaaattaattcatttccgtcgactcaatcatttGGTGATGCATCAAAAACGAAAAGAGTTGGAAGAGGTAGAAGAGCGAGAAGAATTCAAAATGATTCGTTGACTAACTATAGATTCACACAACGTTGTGAAATGTGCAATATGACATTTCAGTCATTTACTCACCGAAATGAGCACATGTTAGTTCATAATAAAGGTAATCCTCAATGTAGGAAATGCGATTGTTATTTCGAAGTAAAAAGTGATTTAACCGCGCATTATAACGAAGTACATCCAAGTCCGTTaatttgtccgaaatgcgatcgtattttcaaacgtccaagtcaactacgtttgcatttagcaagatcgcataatcctctccgaatgtataaatGTCAGTATTGTGACGAAAGTTTCGTACAATCACACCATTTAAAAAATCATGAGAATAAGCATACGGGTAGCAGACCATATTTGTGTACAGCATGCGGAAAAAgttatatgaaactacacatgataagagctcatatcgaaATTAAGAAAACGAAAGGAGAGGGTTGTGGTGAAAGTGATGGTAAAGCAACCAGCGATTATAAATGTAATATATGTAATAAACGTTTTCGATTACAACCATCGCTAACCAAACATATGGAATGTCATGCGGATGAGGAGGAACGTAAACACGTGTGTCAGACATGCAACCAGACTTTTAAACGTTCCGCCCATTTACGTATCCATATCGATGGTGTACATTTACGGTTGAAAAGGTTCAAGTGTGATATGTGCGAGAAGACATTCCATCATCGGGGTACGTTAAACGAACATATAGCCGGAGCGCATCAAACGGAGAACAAATACGAATGTTCGGATT
- Protein Sequence
- MDISYRRCSVPNCRMSKRKIPGLRLFTVPKRNKDLRSLWIFKCGLNNSNNLNLYVCERHFDKSLIGIKRLKDGAVPSLSLPSRTFPNKNVPLSSPILSENDPDELSTHSGIIEGNQQTEQIMTKDKENDPDVPKLNTTKVRRPRNSNGIDEKSIKIKVTTMISKRITELDKLLKNILRNNVSIAEQQLFLEYNERPDFPSLQWIEPTTNSATDLEQTCRVCVHIMTPLEKRVSLFPDTTGNNLNTDFRELNSMNLKIYRDDGLPQNICAPCATRLEQFKGFRLQATRAQYILQAYFDRTVKTNDLDDSLDPYLHMGDTDIEFLKVESIDMLDSDERNPPLENTGINKFLNQNDKDNESNDEIDISEFEVVNSGHDLRYKCNVCERTFKEFIKLLDHRKICKIPDSEPEPEPNISVPVDLVEEQGNDDDSCSDEINSFPSTQSFGDASKTKRVGRGRRARRIQNDSLTNYRFTQRCEMCNMTFQSFTHRNEHMLVHNKGNPQCRKCDCYFEVKSDLTAHYNEVHPSPLICPKCDRIFKRPSQLRLHLARSHNPLRMYKCQYCDESFVQSHHLKNHENKHTGSRPYLCTACGKSYMKLHMIRAHIEIKKTKGEGCGESDGKATSDYKCNICNKRFRLQPSLTKHMECHADEEERKHVCQTCNQTFKRSAHLRIHIDGVHLRLKRFKCDMCEKTFHHRGTLNEHIAGAHQTENKYECSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -