Snob016693.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- zfy1
- Assembly
- GCA_027564815.1
- Location
- JANTOP010073783.1:2-5314[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00014 0.0049 17.3 2.2 2 23 277 299 277 299 0.95 2 8 0.0029 0.1 13.2 2.1 2 23 304 326 303 326 0.92 3 8 0.00092 0.032 14.8 7.6 1 23 332 354 332 354 0.97 4 8 0.0023 0.081 13.5 0.4 1 21 360 380 360 381 0.92 5 8 9.6e-06 0.00034 21.0 1.2 3 23 394 414 392 414 0.97 6 8 4e-06 0.00014 22.2 0.7 1 23 420 443 420 443 0.96 7 8 0.0011 0.037 14.6 4.5 1 20 461 480 461 483 0.95 8 8 0.00016 0.0057 17.2 1.1 1 19 491 509 491 509 0.98
Sequence Information
- Coding Sequence
- ATGAATCCGAAGAAGATACATTCACTAACAGTTATCCCAGAAAAATGGGAATCAGAAACAAATTTATTTTGGCCCAGAGGGCTCAAGGAACCCGAAATGAACAAATTAAGAAAAAATAAATATTCCATACCCCACGAATCGTGGGAAGTTCGGAACTGCAAGTTAAAAAGAAGTGGATTGGCAACATTCGAAGCAGCTGAGAATATGTTAGATACTATGCAAGACAATTCTGATATCGATCCGTCATCAACAGAACAAACTCTGCGGAAACGTACCAGAATGATGGCGCAAAATAAAAGCTATATTGATGCTTTTTCGAAACGGTTGTTCGTCCCTAGCCCCACTTCAAGCACCGAAACCGCACAACTTGAAATATCAGAAGATGTGAAAGTTTTGAGGGATCAGTTGGCAAGAACACGTGAGCAGGCTCAGCAACTTTTACAGGAGCAATCACAATATCAAGTTGAACAATGTCAGCAATCTCAACAGCCATATGAGCCATCATTGTCAAGCGAATGGTTTAATCAGGTACCGCAGCAAATTTTAAGTGAGGATGGCGAAATATTACTGCTGTATAATGAACCAGAAGTTTTAGAGAACATGGAAAATTTGGTTGATAGTCCAATTTATGAAGAAAATGCAAACGAGGAGTCTAGTGATATTGCGAATATGAAAAAAATGTTAGAACAGAACCGGAAGTCTAACAATTTGCTTCATGCGAAAGTAGATAAACTGGCTGAAAAGATAGATGCAATGGATAATAAAATGGACCTAATATTGTCATTGCTGCAAGGTCCAAAATCAAAATTTACAATGGAAAGTAATCCTCAATGCAAGAAATGCGATTGTAATTTCGAAACGAAAAGTGATTTAACGGCGCATTATATGGAAGTGCATCCAAATCCGTTAATTTGTCCGACATGCAATCGTATTTTCAAACATCCACGTTATTTTCATACGCATTTAGCTCAAGCGCATAATGCTCTCCCAAAGTATAAATGTCGGTATTGTAATAAAAAATTTAAGCAACCTCACCATGTGAGAAATCATGAGACTTCACATACCGGCGCCAGACATTTCTTGTGCGCGACATGTGGAAAATCGTTTAAAGATGATGGTTCTTTTTCAACACATCGTAGGCTATGTGACCCATCGCATAAATTGTATAATTCTCTGGCATGCAAACATtgtggtaaattgtttgcttcgtcaacaacgctcatcaggcatattagtactcacaccggagataagccgttcatttgtgatatatgtgacaagcgatttactcaaaagatgactttgaaactacacataataagtactcaTGTCCAAATTGATAGAAATGGTGTGACCATCATTGCATCACAACTATTTCAGTATAAATGTAAAGTATGTAATAAACGCTTTCAATATCAACCATCGTTAACCAAACATTTGGAATGTCACGCGAATGAGGAGGAACGTAAATACGTGTGTCAGACATGCAACCAGACGTTTAAACGTTCCGCACATTTACGTATCCAT
- Protein Sequence
- MNPKKIHSLTVIPEKWESETNLFWPRGLKEPEMNKLRKNKYSIPHESWEVRNCKLKRSGLATFEAAENMLDTMQDNSDIDPSSTEQTLRKRTRMMAQNKSYIDAFSKRLFVPSPTSSTETAQLEISEDVKVLRDQLARTREQAQQLLQEQSQYQVEQCQQSQQPYEPSLSSEWFNQVPQQILSEDGEILLLYNEPEVLENMENLVDSPIYEENANEESSDIANMKKMLEQNRKSNNLLHAKVDKLAEKIDAMDNKMDLILSLLQGPKSKFTMESNPQCKKCDCNFETKSDLTAHYMEVHPNPLICPTCNRIFKHPRYFHTHLAQAHNALPKYKCRYCNKKFKQPHHVRNHETSHTGARHFLCATCGKSFKDDGSFSTHRRLCDPSHKLYNSLACKHCGKLFASSTTLIRHISTHTGDKPFICDICDKRFTQKMTLKLHIISTHVQIDRNGVTIIASQLFQYKCKVCNKRFQYQPSLTKHLECHANEEERKYVCQTCNQTFKRSAHLRIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -