Basic Information

Insect: Symmerus nobilis
Gene Symbol: RREB1
Assembly: GCA_027564815.1
Location: JANTOP010022339.1:4830-9717[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.17 6.2 7.6 0.9 1 23 119 141 119 141 0.93

2 15 0.0006 0.021 15.4 0.2 1 23 153 175 153 175 0.98

3 15 4.8e-05 0.0017 18.8 4.6 1 23 181 203 181 203 0.99

4 15 0.19 6.7 7.5 0.8 1 23 301 325 301 325 0.93

5 15 0.48 17 6.2 2.8 2 22 331 351 331 351 0.92

6 15 5.6 2e+02 2.9 0.9 1 11 398 408 398 418 0.80

7 15 0.015 0.53 10.9 0.1 1 23 546 568 546 568 0.97

8 15 1e-05 0.00037 20.9 0.3 1 23 577 599 577 599 0.99

9 15 0.0016 0.057 14.0 3.1 1 23 605 628 605 628 0.97

10 15 0.0016 0.057 14.0 2.1 1 23 935 958 935 958 0.95

11 15 0.00015 0.0052 17.3 0.3 2 23 1230 1251 1229 1251 0.97

12 15 0.25 8.7 7.1 6.3 1 23 1257 1280 1257 1280 0.97

13 15 0.39 14 6.5 2.2 1 23 1367 1390 1367 1390 0.95

14 15 0.072 2.5 8.8 0.7 2 23 1438 1459 1437 1459 0.93

15 15 0.0076 0.27 11.9 5.1 1 23 1465 1487 1465 1487 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.17	6.2	7.6	0.9	1	23	119	141	119	141	0.93
2	15	0.0006	0.021	15.4	0.2	1	23	153	175	153	175	0.98
3	15	4.8e-05	0.0017	18.8	4.6	1	23	181	203	181	203	0.99
4	15	0.19	6.7	7.5	0.8	1	23	301	325	301	325	0.93
5	15	0.48	17	6.2	2.8	2	22	331	351	331	351	0.92
6	15	5.6	2e+02	2.9	0.9	1	11	398	408	398	418	0.80
7	15	0.015	0.53	10.9	0.1	1	23	546	568	546	568	0.97
8	15	1e-05	0.00037	20.9	0.3	1	23	577	599	577	599	0.99
9	15	0.0016	0.057	14.0	3.1	1	23	605	628	605	628	0.97
10	15	0.0016	0.057	14.0	2.1	1	23	935	958	935	958	0.95
11	15	0.00015	0.0052	17.3	0.3	2	23	1230	1251	1229	1251	0.97
12	15	0.25	8.7	7.1	6.3	1	23	1257	1280	1257	1280	0.97
13	15	0.39	14	6.5	2.2	1	23	1367	1390	1367	1390	0.95
14	15	0.072	2.5	8.8	0.7	2	23	1438	1459	1437	1459	0.93
15	15	0.0076	0.27	11.9	5.1	1	23	1465	1487	1465	1487	0.99

Sequence Information

Coding Sequence: ATGGATCGTCGCCCATCGACCACATCCGAATCGTCCATCGAACCGATGGACATCAGTACAAAAACGACAAGCACGGAAGCGAATTCATCAACGGGTGGTACGGGGCCGACACGTTGCCCGACTAGCGATCAAAATGATTCCGAACATTCATTGGACGTTGACGATCCGTATCGACCACAGTTCATTGAAAACTATCGTCCGGCAACAACGGAGAAACCTCACAAATGGATCGATATAAAGCGATCGACAAACAATAACAATAATAACAGTATCCAATATGATACGTCCGATGAATATGGTCGCGTTAAAACCACACAAAATGGCCGAATGACGGCCATTACAAATGATGGGAAATATGTGTGCCCGATATGCAAATCGGAATCGTTAACCCAACATGAATTCACTGAACATATCCGAAGCCATAACAATGTTAGCGCGGATGATGATGGACAAAATTTTACATGTCAAATTTGTTTTAAGGTTCTATCGTCAGCATCATCGCTAGATCGCCATGTTTTAGTTCACACCGGTGAACGACCGTTCACTTGTAAATATTGTTTGGTAACATTCACAACGAATGGTAATATGCACCGACATATGCGTACGCATAAACATAATAAGTTGACGGGTAgagcgagtacaacgggtggtacaacgaacgaggacgatgatgatgatgatagtggtggtggtggtggtaatcgaacgcattatgatagcgatggatcgacaagcgattcgacaaGTACGAGCAGTACAAATTATGGGAAGAGAAAGAGTACGGCAACGGATGATGGCCGATCGGGTCATTTCAAGCGTCGCTTAAAAACGATAAACAACAACAATATCATTAACAGTAATGATCCGGTGTCTGGTGGCACACCAACCAGTTTACAACGATTCTGTTGTCCCGTTTGTGATCGTACCGATTTTTCCAGTATGATTAGTCTAGAAAATCATATGGATCGCGAGCATCCAAGTATCCAGGCACGGTGTCGTTACTGCGAAATTGTTTTTAAGAGTCACAAAGCGTTAAACGGTCATAAATGTACCGGTGGCATTTCAAAATCGCCAAATATAACGCAAGGTTTCAAGGATTTAACGTTCGTTGATTTTTCCAGCGAGAAATTTCCGCTCATCGCCAAATCGATGTGCGAACAAACGATTCGTACACCGATTACCAATCAAAAATTCGAATGCCATAAATGTTATCGTGCCTTCCCATGTCAGAGTGCCGTTGATATACATGTGATCGCATGCGGACAACGGCAAGCGTTCGACTATTCAATTGGGCGCCATCACGGTACAACGGATGAATCGGATGAAGAGGCGAGACGTGATGATTTCTTTGCTCATTTAGATTTACAAAATCGATCACAAATCTCTTCCACACTGAATACGACTGGTGATTCGATCGTTGATCCGAAAATGATTATGGAACGGCAAGCATCACCGAACGATTCAAATGGTCGTGATCTAGCCGACATTCAGTCGATCATTAATGTTGCGTCGGCTGGTAGTTTCTTACGACAATTCGATAAATCTCGCTCCATACCGGATCCATATCCGAGGGAGGAGGAGGAAGCGCAAGACGCATTTACGGCTGAATTTCGGAAAATGAAATTGCGTGGGGAATTCCCCTGTAAATTATGTACGGCCGTATTTCCAAATTTACGCGCTCTTAAAGGTCACAATCGTATCCATTTGAGCGCAGCCGGTCCAGGCccgtatcgctgtaacatgtgtccgtacacaattaacgataaagctgctctaatccgtcatatgcgaacacataatggcgatcgaccatacgaatgtagtttgtgcaattatgcattcacaacaaaagcgaattgtgaacgacatctacgTAACCGCCATGGTAAAACGACACGGGATGAAGTAAAGCGATCGATCATCTACCATCCGTCAGAGGATTCGAGTTGTGACGATCCGATAAAGAAGATTCAAATTTACAATGCATCATTTGAGGATGATCTCCCCGAACAGGTGTCACCGCCAAAAGATCGTAGTACACCAGTGTCTCATTTGAAGGAGCTGCTGACACCAGAACGCACGGCCGTTAAAATTCAGGTGAAAAGTATGGAGAAATTGGTTGAGGAAAAACGATCGTACGATCATGATGTGGATGAAAGAACGGAGCATAGACCAATCGATTTGTCAATGGACGCATTAGATTTAAGTAAGAAAACAGGAACGTATCCTGAGCAGCAACAGGTAACGGAAACGGTAGATGATGAGGAAGGGGATGCGGATGACACAGATGGGGAAGCGGCGATGACAAATCAAAAGATTGATTTATCGATGTTCGATCATCATGCCCAATTTCAACCATCGACAACTGCTCACTACCTACAATTATATCGAAACTTTTTGTTTCCGCCGACCGCTTTTCCTCTTCACCCTTTCCTACTACACGGTAATTTCTTACCGACCGACGATCAACACAAAGACTTGTCAAACGAACGTCCAATGTTCCCTTTGATGCATCCATTACTTTTACCACCCTCTCATCCACCGGTTGGTCCACCCCCTCCGATACCAATCGGACCACCACCTGGTCATCCTACCGCAGCCATCAAACAGGAAGCCGTTGATCGTTCAATGGGTACATCAGAAAAACGGATGAGCTCCCCACAGATGCCCATCAATCACTCGACACAATCAAATCGTTCGAGTGGCGCTATAAATTCTGGATCCGGTCCAGTAAAAATGGTTATAAAAAACGGTGTTTTAATGCCAAAACAAAAACAGAGACGTTACCGTACCGAACGACCATTCGCTTGTGAACATTGTTCGGCAAGATTTACATTACGATCGAACATGGAACGACACATAAAGCAACAACATCCACAATACTATGCGCAACGACAGCGTAATGGGGCCCAAGCGATGATGAGACGCAGCGCTGGACCACCACCACCGTCTCAACCACCTGCACCAGCACCTATCGGTACATCAGTTGTCGGCCATCCAACTGTAATCCCTTCAAATTTTAATTCCATATCCGATCAAGTGAAGTATGCGATATTCGCTCAACAATTTCAACAACAACGGATGATGGATGGACCATTAAATCCGATGATCGGTCCACCGAATGTGTTAAATCCTAATTTACATCCACCCGGTCCGATTCCCGTACAACATCAACAACCAGCTAGGCCGATTGAAGATATAAAACCGACCGAAGAACCGAACGCGGACGATGAAGATGAACCAGATTTGGTGATTGATGAAGATAGTGAACCGGAAGATTTGTCAACTGGAACGCCGTCTACTGATAAAATGATGGCAGCGAAAAAAGTGGCTGACACCATTCTAGAACAGGCGATTAAAGCGAGTCGTACCGTTGGTCCGATTAACGGCGATGGAAAAGATTTTGATACCCGAATATCAACTAATTTCATACCTCGAGATGTAACGACGTTCGGTAAGCGGGATGAGCCTGATTTAGTGCCAGTAGCCCGATTAGTTGACAATGCAACAAATCATTCATTGTCATTTGGTAGTTACTTCCGAACGGACGTTCATGCCGAACAAAGTGACGAAGAGGGTTTGGTGGCTAGTGGTTCTGCATCGGAAAGTAATAATTCCGGTACCGAAGAAAATCCACAGAAATTACAAAAGAAAAAATCAGCGTACAGTTTAGCACCGAATCGGGTTTCCTGTCCGTACTGTCAACGCATGTTTCCATGGTCAAGTTCGTTGCGTCGCCATATTCTAACCCATACCGGTCAGAAACCATTCAAATGCTCTCATTGTCCGTTGTTATTTACAACGAAAAGTAATTGTGATCGTCATCTACTGCGAAAACATGGCGATTCCGAATCAGCTGTCTCACTCTACGTTCCAACGGACGATGTAACCGAACCGATTGCTGACCCAGTACCAGTCGATGAATTACAGTCGAAAATTGAACAACAACGAACGGTTGAAGTGAATCGTATGGCAGCAACACCCCCATCTACCGTCCACCTACTATCGACGATTGCACAAAAATTTCAAGCAGCTGCGCTCACTTCAAAACCTGAACCACCAACAGCGCTAACCGCTCCGAACAGTGGTGATCTACCATTTAAATGTCATTTATGTGACGCATCGTTTGCTGAACGAATCGCTTGTTTGGAACATATTCGGAAGCAACATATTCAGGAATTCGCTTTATTAATGTCGAAAGGTGCCATCGAAACTGATATCGATCCACAAACCGCTACCACCGAAGATGATGATCGTCCATCGGACGGTACCGTACGTGGAAAATATCCCGATTACACGAACCGTAAAGTTGTATGCGCATTTtgtatgcgacgtttttggtcaacggaagatttacgacgtcacatgcgtacacattctggtgaacggccatttcaatgtgacatttgCTTACGGAAATTCACCCTTAAGCACAGTATGTTGCGACACCAAAAGAAACACGAACAGAATGCGATGACAACTCGCGAACATTCACTGATCCGAATGAGTACGAGCGCAGCAAATTCCGGATCGGATATGTCCGATGATGATCATCCGACACCACAGCGACCATCGTCGGTGGATGGGGCGGGCGGTGCAATGGAACGTTTTGCACGGTTACAGGAACTGTTGCCGCGCGAATTGGCTTGGAAGATTCGGGAGAATTTATTGAAGGCGGCGATTGAGGGGCGACGGGAACAGGACGATCCACAGGCTGATTTGATTGGAAATTTGTTGGGTATCAGCGATCAGGGAATGTTGAATAAGGTGTTACTGTCATCCGCTGATGAAGCGGCGAAATTGTTGGGCGTTGATAAGTGA
Protein Sequence: MDRRPSTTSESSIEPMDISTKTTSTEANSSTGGTGPTRCPTSDQNDSEHSLDVDDPYRPQFIENYRPATTEKPHKWIDIKRSTNNNNNNSIQYDTSDEYGRVKTTQNGRMTAITNDGKYVCPICKSESLTQHEFTEHIRSHNNVSADDDGQNFTCQICFKVLSSASSLDRHVLVHTGERPFTCKYCLVTFTTNGNMHRHMRTHKHNKLTGRASTTGGTTNEDDDDDDSGGGGGNRTHYDSDGSTSDSTSTSSTNYGKRKSTATDDGRSGHFKRRLKTINNNNIINSNDPVSGGTPTSLQRFCCPVCDRTDFSSMISLENHMDREHPSIQARCRYCEIVFKSHKALNGHKCTGGISKSPNITQGFKDLTFVDFSSEKFPLIAKSMCEQTIRTPITNQKFECHKCYRAFPCQSAVDIHVIACGQRQAFDYSIGRHHGTTDESDEEARRDDFFAHLDLQNRSQISSTLNTTGDSIVDPKMIMERQASPNDSNGRDLADIQSIINVASAGSFLRQFDKSRSIPDPYPREEEEAQDAFTAEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSAAGPGPYRCNMCPYTINDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHGKTTRDEVKRSIIYHPSEDSSCDDPIKKIQIYNASFEDDLPEQVSPPKDRSTPVSHLKELLTPERTAVKIQVKSMEKLVEEKRSYDHDVDERTEHRPIDLSMDALDLSKKTGTYPEQQQVTETVDDEEGDADDTDGEAAMTNQKIDLSMFDHHAQFQPSTTAHYLQLYRNFLFPPTAFPLHPFLLHGNFLPTDDQHKDLSNERPMFPLMHPLLLPPSHPPVGPPPPIPIGPPPGHPTAAIKQEAVDRSMGTSEKRMSSPQMPINHSTQSNRSSGAINSGSGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYYAQRQRNGAQAMMRRSAGPPPPSQPPAPAPIGTSVVGHPTVIPSNFNSISDQVKYAIFAQQFQQQRMMDGPLNPMIGPPNVLNPNLHPPGPIPVQHQQPARPIEDIKPTEEPNADDEDEPDLVIDEDSEPEDLSTGTPSTDKMMAAKKVADTILEQAIKASRTVGPINGDGKDFDTRISTNFIPRDVTTFGKRDEPDLVPVARLVDNATNHSLSFGSYFRTDVHAEQSDEEGLVASGSASESNNSGTEENPQKLQKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGDSESAVSLYVPTDDVTEPIADPVPVDELQSKIEQQRTVEVNRMAATPPSTVHLLSTIAQKFQAAALTSKPEPPTALTAPNSGDLPFKCHLCDASFAERIACLEHIRKQHIQEFALLMSKGAIETDIDPQTATTEDDDRPSDGTVRGKYPDYTNRKVVCAFCMRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHQKKHEQNAMTTREHSLIRMSTSAANSGSDMSDDDHPTPQRPSSVDGAGGAMERFARLQELLPRELAWKIRENLLKAAIEGRREQDDPQADLIGNLLGISDQGMLNKVLLSSADEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -