Snob020058.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- ZNF296
- Assembly
- GCA_027564815.1
- Location
- JANTOP010009771.1:804-3075[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.4 14 6.5 0.4 3 23 68 88 66 88 0.88 2 14 0.00064 0.023 15.3 0.0 1 23 99 121 99 121 0.97 3 14 3.8 1.4e+02 3.4 3.5 3 23 129 150 129 150 0.97 4 14 0.1 3.7 8.3 0.2 2 23 157 179 156 179 0.95 5 14 0.0002 0.0072 16.8 2.5 1 23 186 209 186 209 0.97 6 14 4.7e-06 0.00017 22.0 1.3 1 23 345 367 345 367 0.95 7 14 0.0018 0.065 13.8 7.9 1 23 373 395 373 395 0.96 8 14 0.00029 0.01 16.4 0.7 1 23 403 425 403 425 0.99 9 14 0.0014 0.048 14.2 0.3 1 23 431 454 431 454 0.97 10 14 0.0028 0.098 13.3 0.8 1 23 462 484 462 484 0.96 11 14 1.8 63 4.4 0.3 9 23 516 530 515 530 0.95 12 14 0.00063 0.022 15.3 1.6 2 23 540 561 539 561 0.98 13 14 0.35 12 6.6 3.9 1 23 603 626 603 626 0.93 14 14 2.1e-05 0.00075 19.9 1.0 1 23 632 655 632 655 0.97
Sequence Information
- Coding Sequence
- ATGGATCAAACCGCCAAATCGAACAGCGATGATCAATATTATTATAAAGTATTCGGTGATTCAGTTTCAGATTCGGAGATCGAACCATCGAAGAGTTCAATTATGACGACAAGATGTGAATATTGTTACATATACTTTTCTGAACTTACAACAACTTGGGAGGATCATATGCAGACCCACACCGGCTCTAGACCGTACATTTGTATCTCCTGTGGAATGACCTTTCGAATGGATAGTGAATTGGATAAGCATTCAAATTATCACGTTACCATAAAAAAATCGGTAAAGGGAACGTATCCATGTGGAGTATGTGGAAAAGCTTTCAATTCAGATCGAGCGATCCAAAAACATATACTTGCACATAAGGATGAATGGCCAATTGGATGTGATTTGTGTTCGGCCCGATTTACACAGAAAATCTATCTATCCTGTCATCGAAATACGTTTCATTGTAACGATAACAATATCGTTTGCACAATTTGTAGTCAAATATTTAGCAGTATCAGACGTCAAGTGGCACATATGAAAAGTGAGCACAATATTATCGATAGGCCACATAAATGTACCGAATGTGAGAATAAATATACACGGAACTATGATTTACAGTTACACATCCGTAATATACATGGTAGAAATGTTATCAATCCGGATTGTGATCGTTCAAAGAACGAAGAATTTCAAGACATTAAAATTACCGATATTCGAGTTAAGGAAGAAGTTAAGGAAAATGATGAATTATACGACCCAGTCATTCACGTTGTTCTCGTTGATGAAATTAAAAATGAGCTTATCGAAACGACGGATGTTTTAATTAAGGACGAACCTCAAAATCCCGATTACACATTTCCTAACGTAGAAGAGGAAATAAGAGGAACGCCAGAGCTCCGTCCAGATCTTTTCGATGAAGTGATTAGTGAAAAGTCTAATACCGACACATCGACGAAACAAACGGTAATTAATAAGTATTTAATTAGTAAGTCAGGCTCCCAAATTACAGAGAAAACCAAAATATCCAATCGACCGAAATCGATGTATAATTGTAGTTATTGTGATAAAACATTTACGAGACCAAATTCATTAAAGGAGCATGAATACATACATACCGGTGAATATCCGCATCATTGTGCAATCTGTGATAAGAGCTTTCGATATGCCACTCACTACAAGACCCATTTAAGATTCCATTCTACTGGAGAGAGGAAATTATATCAATGCGATATATGTGGTAGAAATCTTAGTTCAAAAACCAGAATAAAGGAGCATATGCGTTTACATTCGAATGAACGTCCGTACATATGTGATATGTGTGATGGTCGATTCATTTCAGCAAATTATTTGAATTATCATCAAAAATCTGTGCATCAGACTGGACCGCGTCCGGAAtataaatgtgaatattgtaataaaacgttttggagacgtggtgcggcaagagaacataaaaatatccacaccgacgataaaccttatctttgcaatgattgcgggaaGGGTAATCGATTTGAATATTTTATCGTATTGAATTCAACCTTTCGGTTATTTTTAGCATTTCGAAATAAGACTCAGTTTGATGTTCACTTAAGGATACATGCGAATGGAGGGATTCGGaaattaaatcaatgtcatatatgtagtaaaagtatagccgcaaaacatgatctaatcattcatattcgtacacataccaacgaacgtccgtacgcatgtgatttgtgcgatAGCCGGGAGGTATCTGCACGCCATTTGAGCTACCATAAAAAACGGTTCCATGGTGAGAATGAAGGAAGAGTCCAAAAACCATTCACCCATTTCTGTTCGATATGCGATAAGAAATATCGTTCAATGATTGCTTTGTATTTCCACCAAAGGAAGAAACACGATCAAAATCGAAATTTCTCGTGTCCTGAGTGTGGTGATAAATTTAAACAATTAGGCCATTTACGACTACACATGAATAGGATTCATTTGGAAAAGAAATGA
- Protein Sequence
- MDQTAKSNSDDQYYYKVFGDSVSDSEIEPSKSSIMTTRCEYCYIYFSELTTTWEDHMQTHTGSRPYICISCGMTFRMDSELDKHSNYHVTIKKSVKGTYPCGVCGKAFNSDRAIQKHILAHKDEWPIGCDLCSARFTQKIYLSCHRNTFHCNDNNIVCTICSQIFSSIRRQVAHMKSEHNIIDRPHKCTECENKYTRNYDLQLHIRNIHGRNVINPDCDRSKNEEFQDIKITDIRVKEEVKENDELYDPVIHVVLVDEIKNELIETTDVLIKDEPQNPDYTFPNVEEEIRGTPELRPDLFDEVISEKSNTDTSTKQTVINKYLISKSGSQITEKTKISNRPKSMYNCSYCDKTFTRPNSLKEHEYIHTGEYPHHCAICDKSFRYATHYKTHLRFHSTGERKLYQCDICGRNLSSKTRIKEHMRLHSNERPYICDMCDGRFISANYLNYHQKSVHQTGPRPEYKCEYCNKTFWRRGAAREHKNIHTDDKPYLCNDCGKGNRFEYFIVLNSTFRLFLAFRNKTQFDVHLRIHANGGIRKLNQCHICSKSIAAKHDLIIHIRTHTNERPYACDLCDSREVSARHLSYHKKRFHGENEGRVQKPFTHFCSICDKKYRSMIALYFHQRKKHDQNRNFSCPECGDKFKQLGHLRLHMNRIHLEKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -