Snob004957.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010018461.1:1707-12216[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.17 6.2 7.6 5.1 1 23 237 260 237 260 0.95 2 18 0.0016 0.058 14.0 0.3 2 23 262 283 261 283 0.97 3 18 0.27 9.7 7.0 0.9 2 23 289 310 288 310 0.95 4 18 0.004 0.14 12.8 0.7 2 23 326 348 326 348 0.95 5 18 0.11 3.7 8.3 0.2 2 23 352 373 351 373 0.95 6 18 8.2e-05 0.0029 18.1 2.5 1 23 377 399 377 399 0.97 7 18 0.057 2 9.1 3.7 1 23 405 427 405 427 0.95 8 18 0.0066 0.23 12.1 0.6 2 20 433 451 432 453 0.89 9 18 3.7 1.3e+02 3.4 1.1 3 23 645 666 645 666 0.92 10 18 0.028 0.99 10.1 0.8 3 21 669 687 667 688 0.94 11 18 0.00069 0.024 15.2 0.5 1 23 728 750 728 750 0.98 12 18 0.00026 0.0092 16.5 1.4 1 23 756 778 756 778 0.98 13 18 7.1e-05 0.0025 18.3 2.4 1 23 784 807 784 807 0.93 14 18 0.0082 0.29 11.8 2.0 1 23 813 834 813 834 0.97 15 18 0.0087 0.31 11.7 0.4 1 23 1046 1069 1046 1069 0.95 16 18 0.0046 0.16 12.6 0.6 1 23 1101 1123 1101 1123 0.97 17 18 0.0021 0.074 13.6 4.8 1 23 1129 1151 1129 1151 0.98 18 18 3.8e-05 0.0013 19.1 1.4 1 23 1157 1180 1157 1180 0.97
Sequence Information
- Coding Sequence
- ATGAAGGCTCTCATAAAAGCCCATCGAATTGCCAAAAAACGAAATGTCAAAAATGAATTCACCGCCGAAATGGACGACATTTTCAGATACATGAATATATCACTTGTAACATTTAAAGAGAAATTTAAAAATGTGGAGTCACGCATGAAAGAAACCAATCAACCCAAGATCTCCACAATATCACAAAATGTAATTCCACCCCCATCCACTTCCTATTCAACCGTTATCGATCCATGTGGATATTGTAGAATCTGTTGTGTGCACTTTGATAAAAGTATGGAAAAACAATCATTATTTATTGAAAATGATGAAAATAATCTAACAAATATTGGAGAAATGTTCGTTGAATATCTATTTAAAGAGTTGGAACCAAATAATGGATTCTTTGATCATTTATGTTCAGACTGTACAACGAAATTGATGGATTTCCATCAATTTCGTTGTCAGGCATTCGATGCTAGTAAGAAAATTAATGATTTACGGGAAAATGATAATCAAAAAGACGACCCATTGCTTAGCACAGTAAAATTAGAAGATAATTTAACGGATGTCAATTCTGAAAAAGATACGGACAACAATGAAATATCAAAACTGTTAGAAGACAGTTCAATGGATACCTCATTCAATTTCGTTAAGGTTGAAGATACATCTGTCCAGATGGATTGCACAGAACCACCCGATAAGGTTTCAACGGCCGTGTTAAAGGGTTTCAACTGTAATTTATGTAACAAACACTTCGAATTTTATAGAGATTTTACCAATCATAATCAGAAAGTTCATTCACAGTGTGAAATCTGTCATAAACAATTAATTGGACCAGCTAATTTAAAAATACACATGGACAGTCATCGAGATCGAGAATTAAAATGTCGATATTGTGGTGATATTTATTTCACATTTAGTACGTTGAGTCGGCACGAGGCTCGACACCAACCCGGACCCAAACGAAACCGTCGGCCAATTGAGAAACCGGCAAAATGTGACATTTGTCACAATAAATTTCAAGGACCAGCAAATTTAAAACAACACATGGCAAATGTTCATCTGGAACTAATGTGTCGGTATTGTGGTGAGAAACTATTCTCTGCTGACGCAATGAAACGGCATGAAGCTCGGCATACAAATGAATTCGTATGCTCGATATGTGATAAACGTTTCCCAACCGAACATTCACTGCGGATCCACCATCAAGGACATGCGAATCATCGACGGTACATTTGCGAAATTTGTGGTTCGAAATTTCGGAATAAAAGTCACATAACGTGCCATTTAGAATCGCACGGTCCCGCAAAACTTAAATGTGAATATTGTGATAAAACATTTAAACGTACCATTTCCCAACGAATACATCGCGAAAATCAAGAAGAAGTCAGTTTTGGAAGAAGTCAAGAAGAACGTCAAGGACTGTCTGAACAACATGATGAGCACGTTGCTGAAGCAGAGGCGGGGTATGAGAGTAAACGGCAAGACAAGGCATCAGCAACGACAAATCCGTCAAAAAGAATTAAACCAACGAATGGATTATTCGATCGATTATGTACCGAATGTACATCAAAATTACATCACTTCTATAAGTTCCGGTTGGAAGCAATTGATACGAATAATAAATTCGCACGATTGTTTAATAAAGGACAAGGGGTAATCGAGGAGGAGGCCATTGTTTTCGATATACCGGAACAGAAGATTAAAAATGATGTCGATCCGTTAGTAAGTGAAGATTTGCGTTTAGATGTCGAAACAGTTGAAGAATTTGAAGATAACGATTATTCTTCGCTTAATATAATTGAAATTGAAACAATTAAAACGCAACCAGACAAATATGTGGATAATGAAGTGTCCACTCCGTGTAATTCATCTTCATTCCCAGATATCGATTCGGTCTATAATCAAACATCACCAAAGTGGAGAGAGAAATATTTATCTAATCGATGGTGTGAGCTGTGTAATATTTATTTTGATAAAGTAAAAGATTTCAGAAAGCATAACAAAGATCTACATTTCGGGTGTGACCATTGTAATAAAACATTCGGTGGACCACTTGAACTAAAATCACACATCCATAAAACTCCCGTTAAGACCACAACTCCTGTTAAGCTAATATGTCGCTTTTGTGGTTACATAGTCAAATCAACACCAAATATGTTAGCTCGTCATGAGGCTCGACATTCAAATGATCGTCCATTTGTatgcgatatatgtggtttacggttttataaattaatttatttaaaaattcattttcgtattcataccgacgaacggccatacgtttgtaaGCAGTGCGGTAAAGGGTTTCGAATTCAATGTAACATGACGGCTCATTTAGAATCGCACAATATAGACAAGATGTTTAAATGTGTTGATTGTGATAAAACTTTTCAACGAAGCTTCTCGTTGAAAAAACATCGGGATCAAGTACATTTATTAAGGAATCTGTATCAATGTTCGTTGTGTGGGAAATCGGTGCATTCATCAAATAGACAGAAACATGTCAATGAACATGGTACCAGTGAAGAAATTACAATGAGAACGATACAGGATAATATCAAACCAACGAATGGGTTATTCGATCGTTTATGTACCGAATGTACATCAAAATTACTTGAATTCTATAAATTCCGTTTGGAAGCAATTGATACGAATAATAAATTCGCTCGACTGTTTAATAAAGGACAAGGAGTGATCGAAGAAGAAACAATCGATTTGAATATAGATGAAGGGAAACCTAAACAAGAAAATGCGATAGATGACGATACAATCGAACAGTCGATTATTGATAGGGAAGAAAAGAGAACTGATTTTGAACGGTCCACTTATTCCGATGACGATATGCAATTAGGTGGGATTGGATACGATACCGAAGATAAATTAGATGAAGTGTATTTAGATGAAGAACTGTTTTTTGATAACGATATCATTGAAGAGTATGAGGATACTATAATTGAAACAATTAAAACGGAAGTAGATGAATACGAGAATGGGCTCGAAGATAATATCGATTTTATTGATAATATTGATTCAATAGATCGATCGATAAAGGATAGTGAAGGAAATGTATCTAATCAATGGTGTGAATTATGTAATATTTATATAAATGGTGTGAAAGATTTCCGAGAGCACAACAAAAATATACATTATTCGTGTGATCGATGTGATGAATTGTTTAAAGGATGGTTTGAATTAAAATCGCACACCCAGGAAATTCATGGTAATGGGTTGATATGTCGGTACTGTGGTAAAAAGAAATCATGTGCAAAAGTGCTTGCTCGTCATGAGTCTCGACACACAAAAGACGGAAAATTTGTTTGCGATTTATGCGATAAACGTTATTATGATTTGAAAGATATGAAAGTTCATTTTCTTATTCACACCGATGAACGGCCGTACGTTTGTGAATATTGCGGTAAACGGTTTCGCGTTCACTGTCACATGGTGGCTCATTTGGAATCGCACAACAAAGAGAAAATGTTTAAATGTGTGGATTGCGATAAGTCATTTCAACGGAGTCAATCGTTGAAGGAGCATCGGGAGCGGGTACACTTATTAAAGAATATATGTAAATGTTCGTTGTGCGGGAAAGTGGAACATTTATCGAGGAAAACGAGACATATTAGTAACCATAAAAAACATGGTGAAGAAGTTACAATGCTAAAAATTGACGCCAGTGAAATTCGTAATCCAATAGAAATTGAAATGTAA
- Protein Sequence
- MKALIKAHRIAKKRNVKNEFTAEMDDIFRYMNISLVTFKEKFKNVESRMKETNQPKISTISQNVIPPPSTSYSTVIDPCGYCRICCVHFDKSMEKQSLFIENDENNLTNIGEMFVEYLFKELEPNNGFFDHLCSDCTTKLMDFHQFRCQAFDASKKINDLRENDNQKDDPLLSTVKLEDNLTDVNSEKDTDNNEISKLLEDSSMDTSFNFVKVEDTSVQMDCTEPPDKVSTAVLKGFNCNLCNKHFEFYRDFTNHNQKVHSQCEICHKQLIGPANLKIHMDSHRDRELKCRYCGDIYFTFSTLSRHEARHQPGPKRNRRPIEKPAKCDICHNKFQGPANLKQHMANVHLELMCRYCGEKLFSADAMKRHEARHTNEFVCSICDKRFPTEHSLRIHHQGHANHRRYICEICGSKFRNKSHITCHLESHGPAKLKCEYCDKTFKRTISQRIHRENQEEVSFGRSQEERQGLSEQHDEHVAEAEAGYESKRQDKASATTNPSKRIKPTNGLFDRLCTECTSKLHHFYKFRLEAIDTNNKFARLFNKGQGVIEEEAIVFDIPEQKIKNDVDPLVSEDLRLDVETVEEFEDNDYSSLNIIEIETIKTQPDKYVDNEVSTPCNSSSFPDIDSVYNQTSPKWREKYLSNRWCELCNIYFDKVKDFRKHNKDLHFGCDHCNKTFGGPLELKSHIHKTPVKTTTPVKLICRFCGYIVKSTPNMLARHEARHSNDRPFVCDICGLRFYKLIYLKIHFRIHTDERPYVCKQCGKGFRIQCNMTAHLESHNIDKMFKCVDCDKTFQRSFSLKKHRDQVHLLRNLYQCSLCGKSVHSSNRQKHVNEHGTSEEITMRTIQDNIKPTNGLFDRLCTECTSKLLEFYKFRLEAIDTNNKFARLFNKGQGVIEEETIDLNIDEGKPKQENAIDDDTIEQSIIDREEKRTDFERSTYSDDDMQLGGIGYDTEDKLDEVYLDEELFFDNDIIEEYEDTIIETIKTEVDEYENGLEDNIDFIDNIDSIDRSIKDSEGNVSNQWCELCNIYINGVKDFREHNKNIHYSCDRCDELFKGWFELKSHTQEIHGNGLICRYCGKKKSCAKVLARHESRHTKDGKFVCDLCDKRYYDLKDMKVHFLIHTDERPYVCEYCGKRFRVHCHMVAHLESHNKEKMFKCVDCDKSFQRSQSLKEHRERVHLLKNICKCSLCGKVEHLSRKTRHISNHKKHGEEVTMLKIDASEIRNPIEIEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -