Snob000696.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Symmerus nobilis
Gene Symbol
-
Assembly
GCA_027564815.1
Location
JANTOP010061752.1:5742-8406[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00037 0.013 16.0 1.0 2 23 315 336 314 336 0.97
2 10 1.4e-05 0.00049 20.5 0.8 1 23 341 363 341 363 0.98
3 10 0.00072 0.025 15.1 0.6 2 23 369 390 368 390 0.97
4 10 0.0053 0.19 12.4 5.4 1 23 396 418 396 418 0.98
5 10 0.017 0.59 10.8 1.1 1 23 424 446 424 446 0.93
6 10 0.00092 0.033 14.8 2.2 1 23 478 499 478 499 0.97
7 10 0.0041 0.15 12.7 2.7 1 23 503 526 503 526 0.97
8 10 0.00014 0.0049 17.3 2.3 1 23 543 566 543 566 0.95
9 10 0.00036 0.013 16.1 0.2 1 23 572 594 572 594 0.98
10 10 0.00018 0.0063 17.0 2.1 1 23 600 622 600 622 0.97

Sequence Information

Coding Sequence
ATGGCGGGAGTTAGATTCTATTTGGAGCCGGATTGTCCATTGAATCAAAATCCTATACGAGAAATAGTATTTGTTAAAGTTGAATCAGAATTGATTGCACCGAACCCCGTTACAAATGCACCAACCAATATTGAAACGGCTCCAATTCCTACGAAATCGGTTACGAAGTCGGACGGCTTAAGTAAAAAATCATCGAATGTGAACGATGTGAAAACTCAAATGAAGAGAAAGGTCAAAACACTGACACAAAAAATTCGACGACAATTGAAACGAATTAATAAATTACAAAGTTTAGTAGAAACATCGTCGTCGTCTGTAATCACTAAAGTTGTTCGAGCTCCGTTGATGCCTACAAAGATGAATTATCGATCGCTTAAATGGATGGAGGCAATATCGAAAATTCAGAGTAATATTGAAGATACTTGTCGCTTCTGTATTGCGCCACTATCAAAAACTCGTAAGCGAAAACCTTCGATGTTCGATAAACCCATTTCTCCGTTCATTTTCAACGAGTTGAATATATCGAGTAACGATGGTTTACCACAACAAATTTGTAGAAATTGTTCTAGCTTTTTGAAGGAGTTTAAAAAATTCCATCGACAGGCGAAACGGTCGCAGGATATTTTGAAGCAACATTTCCTTACATCGGTTAACATCGACCTACAAATGAAACCATTGGTAGACAACCCAAATTTATTAGATAATCAAACGGAATGTAATGAAACGGCTTTGATAGATGTACAGTGTCAGGAGACGAATAGATCTACAGAGAAGGAGGCAGAATTAATAACAAATCCGATCAGTGATGATGTTTTAGAAATTCTACCGACCGTAGATTTTGATCCAACAACCGTTGAAATTAATTCACCAAACAGTACAAATGATATCTCAGATATAGATGATAATATAAATTTTGAGACTACAGTGGTTGATCCGAGTCTACAATGTACAGTATGTGATGCCATATTTCGTCAACAGGCCCATAAAAAACAACACATGGCAATGCATGAAGGCCTGACCTATGAATGTGACATATGCGGAAAGAGCTATGGCAGAAAGACTTACATATCCAGACACATGCAACAACATTCAACAACAACACAGACGTGTCCGCTTTGTAATGCAATATTCACAAATCCATATCGATATAAGTACCATTTAAAAACGCACAATCCAAATAAAAAATATAAATGCAAATATTGTGAGAAGTCCTTTTTACAACCGCATCATTGGAAGCAGCATGAGGATACTCATACCGGTGTTAAGCCGTACCTTTGTTTCGTTTGTGGACAAGCTTTTAGAACTTACTCAGATTATACGTTTCATTTAGAAAAGCATACGGGTGTGCCTGTTAAAAGGAAAAAATACAAGCAAGCTCCCAAAATTGCTACAAAGAAAGTGGTAAACGACCCAACAGAACCGTTAGTTCTGTACAATTGCGATATGTGTGATAAACAATTTACTTCTAAAGCTTTATACTCGCATAAACGTACGCATAGCAAACCGTTCGAATGTAACATGTGTAGTAGCCGATTTGCACACAAGGTGCAGTTATATCTACATATTAACCGTAAACATAACGGTAATGGAAATAAAGTAAATGAAGGGGATGAAGACGAACGGAATCATGTTTGTACAGTATGCGATTCGGCATTTAAACGACTCGCCCATTTAAAGTCGCATATACGTTTCGTTCATTTGAAAGAGAAACCGTTTGAGTGTACGATTTGTGGTAACCGGTTTTCTATACGTGGTGTACTTAATGAACACATGTCAACCCATTCGAATGAACGGCCATTTGCTTGCAATCTTTGCTCGTCCAAATTTCGGACTAAACGTACGTTACAGTCTCATATGATTACACATAGAGGGTCGCTGGATATTTAG
Protein Sequence
MAGVRFYLEPDCPLNQNPIREIVFVKVESELIAPNPVTNAPTNIETAPIPTKSVTKSDGLSKKSSNVNDVKTQMKRKVKTLTQKIRRQLKRINKLQSLVETSSSSVITKVVRAPLMPTKMNYRSLKWMEAISKIQSNIEDTCRFCIAPLSKTRKRKPSMFDKPISPFIFNELNISSNDGLPQQICRNCSSFLKEFKKFHRQAKRSQDILKQHFLTSVNIDLQMKPLVDNPNLLDNQTECNETALIDVQCQETNRSTEKEAELITNPISDDVLEILPTVDFDPTTVEINSPNSTNDISDIDDNINFETTVVDPSLQCTVCDAIFRQQAHKKQHMAMHEGLTYECDICGKSYGRKTYISRHMQQHSTTTQTCPLCNAIFTNPYRYKYHLKTHNPNKKYKCKYCEKSFLQPHHWKQHEDTHTGVKPYLCFVCGQAFRTYSDYTFHLEKHTGVPVKRKKYKQAPKIATKKVVNDPTEPLVLYNCDMCDKQFTSKALYSHKRTHSKPFECNMCSSRFAHKVQLYLHINRKHNGNGNKVNEGDEDERNHVCTVCDSAFKRLAHLKSHIRFVHLKEKPFECTICGNRFSIRGVLNEHMSTHSNERPFACNLCSSKFRTKRTLQSHMITHRGSLDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-