Snob020119.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- ZNF711
- Assembly
- GCA_027564815.1
- Location
- JANTOP010072351.1:1-5362[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.36 13 6.6 0.4 1 21 260 280 260 281 0.85 2 13 2.8 98 3.8 2.7 3 23 348 368 347 368 0.95 3 13 0.067 2.4 8.9 2.0 2 23 374 396 374 396 0.95 4 13 2.5e-05 0.00089 19.7 1.7 1 23 400 422 400 422 0.98 5 13 0.21 7.5 7.3 4.6 1 23 428 450 428 450 0.96 6 13 0.0017 0.061 13.9 0.2 1 21 456 476 456 477 0.93 7 13 0.002 0.072 13.7 0.1 2 23 489 510 488 510 0.96 8 13 0.00012 0.0041 17.6 1.3 1 23 516 539 516 539 0.97 9 13 0.0062 0.22 12.2 5.4 1 21 554 574 554 576 0.95 10 13 4.2e-05 0.0015 19.0 2.7 1 23 584 607 584 607 0.96 11 13 0.001 0.036 14.6 0.1 1 23 613 636 613 636 0.95 12 13 0.00022 0.0078 16.7 1.4 1 23 643 665 643 665 0.99 13 13 0.16 5.7 7.7 0.2 1 13 671 683 671 687 0.88
Sequence Information
- Coding Sequence
- ATGACAAAGGATAAGGAAAATGTTTCGGATATTTCGAAAATAGATAAAACCAAAGTGAGGAAACCTCGAAATCTAACTGGTATCGATGAAAAATCCATCAAATTAAAAGTCACGACTTTGATATCGAGACGAATTATGGAATTGGATGAGCTTCTGATGAATATCCGTAGAAATAAAGTTTCCATTGAAGAACAACAGCTTTTCTTGCAGTATAATAAGAGAGCCGACTTCCCATCACTACAATGGTTTGAGCCAACATCAAACTCGACTACCGATTTGGAGCAAACTTGTCGCGTTTGTGTTCATACGATGACGAGACTTGAAAAACGGGTCAGTTTGTTGCCTGAAATGTCCGGAAGTAATTTCAAAACCGATTTTGGAGAATTGAATACCATGAATTTGAAAATATATCGAGATGATGGGCTTCCACAGAATATCTGTGCTCCTTGCGCCACCCGATTGGAGCAACTGCAGGATTTTCGATTAAGGGCTATCAGAGCTCAATACATATTACAGGTTTATTTCAAACGAATTGTTAGGAGAAATGATTTGGAAGATACGTTGGATGATCCAAATCAACATATGGACGATGTTGGTATTGAATATTTTAAAGAGGAACCACCAATCGAAATTTTCGATTCTTCCGAACTGGATCCTCCGTTAGTGACTACTCGAATCGATGCATGGTTAGATCAAAGTTATAATGATAATGATTTGAATGATAAAATTACTGATATAAATGAAAAGGAAAATGTTAATTCCGTTAATGATTCAGATTTTAAATGTAACGAATGTAAATTATCGTTTCTGGAATACAGAGAGCTGGTGGACCATAGAAAAATATGTAAGAAATCAAAACCGGATCGGATCGATCTTGTTGAGGAAATTCGAATGGATGATGATTCTTGTTCGAATGAATTAAATTTAGTTCAGTCGACCGAATCAGTTGATTGTACATCAAAAAAGAAAAGAGTTAAACGAGTTAAAGTAACGACGAGAATTAAAGATGATCCGAAGAGCAACTATGAGTTCACAAGAAATTGTGGAATTTGCAGGACGACATTTCATTCGTTTGCCAAACGAAATGAGCATATGGTGAAACATAATGAAGGTAAACCTCAATGTTTAAAATGCGATTGTAATTTCGATGTAAAAAATGAGTTAACGATGCATTATAAGGAAGTACATCCGAGTCCATTCATTTGTCCCAAATGCAATCGCATCTTTAAAAATACAGGACGACTACGTAGACATTTAAAATCGCATAAGCCTGACCGAAAATATAAATGTCAGCATTGTGACAAAACGTATCTACATATACGAGATGTGAAAGATCATGAGAATACGCATACGGGTACCAGACCATTTATGTGTAAAGCGTGCGGAAAAGGATTTCGATATGGTAGTAGCTTAAGAGTCCACCGTATCACCTGTGACCCATCCCATAAACTTTATAAGTCTCTTATCTGCGATCAATGTGGTAAATCGCTTGGTGCCAAATCCCTTCTTGACAAACATATTCTTACTCACACCGGTGAGAAACCATTTGTATGCGATTTATGTAGCAAACAATTTACTCGAAAGCAAGTATTGAAAGTACATATAATGAAATACCATATTTTCGAAAGGAGAGGGAAAGGTAGAATTAAGAGTAATTATTATAATTGTAAAACATGTAATCAACGATTTCGATATCAAGCAACGTTAACCAATCATTTGAAATGTCATACGGATGAGGCGCATCGTAAATTCGTGTGTCAGACATGCAAACAGGCCTTTAAACGTTCCAAACATTTACGTTCTCATATCGAAAGTGTTCATTTACGGTTGAAAAGGTACAAGTGTGATATATGTGAGAGATCGTTTAATGCGCTGGCTTCTATAAAAAGGCATATACTCGGAGCCCATTGCCATACGTCAAACGATTACGAATGTTTACAATGTGGTAAGAAATTACGGAGTATACGTTCATTACGCGATCACCGCCGAACACATACCGGCGAGAAACCATATCAGTGTGAAACATGTGGTGCACGGTTCACGCAGTTTGCATCAATGTCAA
- Protein Sequence
- MTKDKENVSDISKIDKTKVRKPRNLTGIDEKSIKLKVTTLISRRIMELDELLMNIRRNKVSIEEQQLFLQYNKRADFPSLQWFEPTSNSTTDLEQTCRVCVHTMTRLEKRVSLLPEMSGSNFKTDFGELNTMNLKIYRDDGLPQNICAPCATRLEQLQDFRLRAIRAQYILQVYFKRIVRRNDLEDTLDDPNQHMDDVGIEYFKEEPPIEIFDSSELDPPLVTTRIDAWLDQSYNDNDLNDKITDINEKENVNSVNDSDFKCNECKLSFLEYRELVDHRKICKKSKPDRIDLVEEIRMDDDSCSNELNLVQSTESVDCTSKKKRVKRVKVTTRIKDDPKSNYEFTRNCGICRTTFHSFAKRNEHMVKHNEGKPQCLKCDCNFDVKNELTMHYKEVHPSPFICPKCNRIFKNTGRLRRHLKSHKPDRKYKCQHCDKTYLHIRDVKDHENTHTGTRPFMCKACGKGFRYGSSLRVHRITCDPSHKLYKSLICDQCGKSLGAKSLLDKHILTHTGEKPFVCDLCSKQFTRKQVLKVHIMKYHIFERRGKGRIKSNYYNCKTCNQRFRYQATLTNHLKCHTDEAHRKFVCQTCKQAFKRSKHLRSHIESVHLRLKRYKCDICERSFNALASIKRHILGAHCHTSNDYECLQCGKKLRSIRSLRDHRRTHTGEKPYQCETCGARFTQFASMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -