Snob016159.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Symmerus nobilis
Gene Symbol
-
Assembly
GCA_027564815.1
Location
JANTOP010060819.1:628-6907[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.68 24 5.7 2.0 1 23 994 1019 989 1019 0.92
2 12 0.13 4.7 8.0 3.9 1 23 1116 1138 1116 1138 0.98
3 12 1.7e-06 6.1e-05 23.3 0.9 2 23 1141 1162 1140 1162 0.97
4 12 1.7e-05 0.00062 20.2 1.4 1 23 1168 1190 1168 1190 0.99
5 12 0.00029 0.01 16.3 2.2 1 23 1201 1224 1201 1224 0.96
6 12 0.099 3.5 8.4 5.5 3 23 1262 1283 1260 1283 0.95
7 12 0.77 27 5.6 0.1 2 23 1297 1317 1296 1317 0.95
8 12 3e-05 0.0011 19.4 1.8 1 20 1324 1343 1324 1346 0.92
9 12 1.5e-05 0.00051 20.4 0.5 1 23 1354 1376 1354 1376 0.99
10 12 0.00066 0.023 15.2 5.8 1 23 1382 1404 1382 1404 0.98
11 12 0.00018 0.0062 17.0 3.5 1 23 1410 1432 1410 1432 0.98
12 12 0.004 0.14 12.8 4.1 1 23 1438 1460 1438 1461 0.96

Sequence Information

Coding Sequence
ATGGAGTCGAGAATACAATGTCCGGTTTGTTTACTATACCTGCACGTAGGTATGAACTTGCGAACACACTTGGACACCCatccgcaagatcaagtgtatatggcattagtaaatatgacattgacccaaggcaatattgaagCCTCTCATCCATCACAAAATAGGGGATCTGACGCTATGGTTGCCTATCAACGAGCCTATCAATCAACACCAAATTCAACAACACCAACACAACCTCAAACATTTGTCCAGCAGCGACCAGCTCTTATGTTTCATCAGCAACCACAACAACAGCAACAGGAACTACCATGTACGGTTGGCACACCTATTCCAAATAACCAATATCAACCATCAGACAATTCGACTGTTGCACCTGGTAGACGACATATAATATTAGTGAACAGTAGTAGTACAAGTGTCTATCGAAACGAACAACTAAAATATCCGTACGGTCAAATTGTACCGCAAGTAATTTCTCCACCAAACGTATCACAGTTTAAAGCAATACCGGTTTGTGCAAAAACGATCCAACCGATTATTTCGACCGGTCTTACCAGCACAATAGCACTGAAAAATAATCAATCAAATATGTATCAAATTCCACCGCCACCATATCCATCCCAACCACCTATTACTTCTAATGAAACAACCATTCAACAATGTGCAACGCCAATAACAACAGCATCCGTTCAATATTCAATTGAGGATGGAGATCTATCCGTTCAAACCTCTTCTACCGATAAAATGTGCGAAGAAGATTATGCTGATTATATTTGTAATGGAAAACTGATTGGGGAAGGTACCGAGGTTGAAGGGGATTTCGATATTTCCGAAGAGATCATTCAATCACAGTCGCAAGCTGAATTGGAAAATCGTCAAGTCGGTCCGATACGTTCCGATTTTGATTCTGAAAGTGAAATGAACTTATTGTCGCAGCGTAAGGAACAGAAAGGTTTATACGTTCTTAGTGATATTAGATTATCACCGTCAAGTTCCGTTAACTTGTCACAATTATCACAGGTTATCGATGACGATATTATAAGTATTAATGATTTGTTTATTCCGAAAGGAAAGCGCCGTTCGAATAGGACGAAATTGACGGATCAAGTTATTTGTATTGATGATGACAATGATAATGATGTTAAGGAATCGATTGGTGATGTGGAAATGCTAGAAGAAAGAAGAGATTACTCCGGTTACTCAACAGATAATAACTCCGATGATACGGAAATTGAGCAAGAATATAAAGACGAAACACAAATCAACATTACCGATTCTGATAAAAAAACGACTATAAGGACCGTACATACATCACCTAATAAACACATCCCTTCGTTAATATCAAGCATAACGACAAGTGTTATCCGTTTAGCATTACCATCTCAAAGATCAGTGCAAGAACCACCTACCGTACCGGAACAAATTGATTTAATAAAAGAGGAGAATGGGGAGGAATTACCCTTACATTCGAATTTAAATACTGTTGAATCGGATTTGGAGAATTCTCCACCAATCCAACTGGATCAGAAAATCAGCGACCAGAACACGGATCTAAAGGATGATGATGAGATTAAAGATGAACCCGGTGAACGATCCGAACTAACATCTGACATTTCACTCCGACGATCCGACCGAATCCGATCGACCAATTTTCGATACAACACCAATCCAAAGAAATTAATTGTTAAATTTAAAAAACCATTTATACCGGTTGTTGAGGAGGAAGTCAACATGCAACCATCAATTGAAAAGGATGTCATAAAACTGGAATGTGTTGATTTATGTGAATCGAATGAAACATTTGAAAAAGTCGTCAAGAAAGAGGATATGCAATTATTATCCGATCAATTTGATGATCCATTTAGTCCGTTGAGATTATCATTTACGCCACCTCTCACTTCCGATTCGTTAGAAACAAATGAAAACGATATTTCGGATGAAATAGTTGTTGACACTAAAGACGACGTGGTAATGTTGAAAGATGAAATGGTTGTGGAAGATTTACTAACAGAAAATCAATTTGAAATTAAAATCTTTCCTACATCAATGGAGAAAATTGAAGAATCGAGCTGTGATGGATTTGAACAATCCGTTCCAAGCCAACCAAGCCATCCGATTCAATCCGATCAGTTAATGACAACCGATGAAATTAAAATTGATGAGAAGCCAGATAATATTTCGATACCATTATCAGAAACGATTGATGAAAAATCAACAATAGAATCAGATTCATTAAATCCAACAACCGTTTCAACAGACTCGTCAGCCTCAATAAGAGCAACAGCGATAAACGTAAAAATTGAAACATTTACAAATCAAGAGGATAATGAAGCAACACCCGGCCCAAGCCGATTAGACTATGGCCTTACAAAATATTTAGGTTTCGAAAATGTAACTCATGACAATGATGAATTTTATACGGGTGTGAATTTATCACCGGCTGATTATGGGACCGATCCATATACAACGTGGACGCAGCGTTTCAGTCCACAGTACGTACCATTTGAAAATGGTGATAAAACGTCCTATGTTGATTTGGATTTATGTAAAAATGGTACAGTTGATACAAATTTTGTAACAACGACAAGCAATAATAGTTGTACAATTGTTGATGGATGCCGGACACCATCGACAACGAATAGTTTAAATATTCGATCGGATGAAAAGATGCCAGCGAAGGGTGAGATATCGGAACAGGAAAGTAATGGGGATATTGAGGGATCTTGGAGTCATCAGATGTTCCCATTTCAAGATACAACACCTCGTTACCCAAGCTCATACGACACGACCGTGGCCCGAGAAAGTTGGAGTCTAAGCTACGATCAAATGTCGGACGTTAATCTATCAACGGTTATGCCAAAATTCACACCAATGATAACTGAAGAAGAAGAGGATATCAAACCGAATGTTTCGGATTTTACAGCGATTGAATCACTAGCTATTACCGATCAGCTCACAAAGAAAACTTGTCCAAAAACGTTCGCGTGCACTTCTTCGAGTTGTGAGATGACATTTTCTAAATTATCCGAGAAACGTAATCATATGTTGCAATCGCATGGGATCTTGGTAAAGAAAAAGAAGCGAATCGCTCGGTCATTGGAGGCGGGTGGTTCGAGTACATCGATCGTATCTAGTACGATAACAAGCGGTGAACTAATAAAAGATGAATTTGGGGCGGGTAGTAGTCGTTGTACATTGGCTAAAATTAAATTAGAATCAAATTATAAAAGTATAGCCGAACGAAATTTATCGTTGATAACGTATAATTTTAATTTGTACATTGAGGCGAATAAGAATCGGGGTGATGACTTTAAAATTCCCCCAATCCTATCGACGGATGGTGCGTATGTTTGTTTTACGTGCCATGAATGTTTTTCGATACTGAAATCGTATGACGAACATATGGCAACGCATCCGATTGAGTGTTTTGATTGCGGTAAAACATTTAAGCGTTGGATTAATTTCAGTATACACATGAAGCGACATTTGAATATCCGGGACTATCCGTGTCAGTATTGTTCCAAGAAATTCGTGCTCAGACAAAATCTACTCGATCATATGCGGACGCATCCGAATGTTGCTGTTACTGATGAGGCACCATATCAATGTACGTTATGTCCAAAGCGATTCAATCGTTTCTCAAATATGGTTCAACATCGGGCTCGTTTTCATTTTAGTGCAAAACGACCGAAAGATGATTATATATGTAGTTGTGGTGAGGTGTTCCACAGTGAGGCACGCATCGCTTGGCATCGGGAAACGCATGATTTAAAACCGAAATGTTGTCCCTATTGTCGCGAACGGTTTTTACACCGTAATAGTTTAACGCGTCACATTCGCTTATCTCATATGGAACATTTCCGAAAAATGAATGAGGAAAGCGTCGTAGAATGTCCAGTTTGTAAGGATGTGTACAAGAAAAGTAGCATAAAAGCTCACATGTCCGTGCACAGTGAAAAACGAACAGTGTTTGAATGTACGATTTGTAATAAACGATTTACAACCAAATGGAATCTGAATCAACACAAATGGACGCATGCGAGCCGATCAACCAAGCCGTTTAAATGTACTACATGCCCGAAGGCATTCATTCGAGAAGTTGAATATACGGCTCACATGAACAAACATAAAGCGTTGAAACCGTACACATGCGATCATTGTGGATGTAAATTTGGACGAAAGTACAATTGGTTGCGACACACCCGTGAACATAATGCACCCAAAAAACATCGGTGTGAGGTGTGCGGCAAGGATTTCCATCGCGCCTACTATCTTATTGAAcatcgacgttcacatacaggtgaacgtccatttgaatgtgtaatttgcggtaaaacgtcatcaacaaaaacaaatcataataaacatataaaaattcatCATGCTCGCGACCTTCAAACATCCGAAGCATAG
Protein Sequence
MESRIQCPVCLLYLHVGMNLRTHLDTHPQDQVYMALVNMTLTQGNIEASHPSQNRGSDAMVAYQRAYQSTPNSTTPTQPQTFVQQRPALMFHQQPQQQQQELPCTVGTPIPNNQYQPSDNSTVAPGRRHIILVNSSSTSVYRNEQLKYPYGQIVPQVISPPNVSQFKAIPVCAKTIQPIISTGLTSTIALKNNQSNMYQIPPPPYPSQPPITSNETTIQQCATPITTASVQYSIEDGDLSVQTSSTDKMCEEDYADYICNGKLIGEGTEVEGDFDISEEIIQSQSQAELENRQVGPIRSDFDSESEMNLLSQRKEQKGLYVLSDIRLSPSSSVNLSQLSQVIDDDIISINDLFIPKGKRRSNRTKLTDQVICIDDDNDNDVKESIGDVEMLEERRDYSGYSTDNNSDDTEIEQEYKDETQINITDSDKKTTIRTVHTSPNKHIPSLISSITTSVIRLALPSQRSVQEPPTVPEQIDLIKEENGEELPLHSNLNTVESDLENSPPIQLDQKISDQNTDLKDDDEIKDEPGERSELTSDISLRRSDRIRSTNFRYNTNPKKLIVKFKKPFIPVVEEEVNMQPSIEKDVIKLECVDLCESNETFEKVVKKEDMQLLSDQFDDPFSPLRLSFTPPLTSDSLETNENDISDEIVVDTKDDVVMLKDEMVVEDLLTENQFEIKIFPTSMEKIEESSCDGFEQSVPSQPSHPIQSDQLMTTDEIKIDEKPDNISIPLSETIDEKSTIESDSLNPTTVSTDSSASIRATAINVKIETFTNQEDNEATPGPSRLDYGLTKYLGFENVTHDNDEFYTGVNLSPADYGTDPYTTWTQRFSPQYVPFENGDKTSYVDLDLCKNGTVDTNFVTTTSNNSCTIVDGCRTPSTTNSLNIRSDEKMPAKGEISEQESNGDIEGSWSHQMFPFQDTTPRYPSSYDTTVARESWSLSYDQMSDVNLSTVMPKFTPMITEEEEDIKPNVSDFTAIESLAITDQLTKKTCPKTFACTSSSCEMTFSKLSEKRNHMLQSHGILVKKKKRIARSLEAGGSSTSIVSSTITSGELIKDEFGAGSSRCTLAKIKLESNYKSIAERNLSLITYNFNLYIEANKNRGDDFKIPPILSTDGAYVCFTCHECFSILKSYDEHMATHPIECFDCGKTFKRWINFSIHMKRHLNIRDYPCQYCSKKFVLRQNLLDHMRTHPNVAVTDEAPYQCTLCPKRFNRFSNMVQHRARFHFSAKRPKDDYICSCGEVFHSEARIAWHRETHDLKPKCCPYCRERFLHRNSLTRHIRLSHMEHFRKMNEESVVECPVCKDVYKKSSIKAHMSVHSEKRTVFECTICNKRFTTKWNLNQHKWTHASRSTKPFKCTTCPKAFIREVEYTAHMNKHKALKPYTCDHCGCKFGRKYNWLRHTREHNAPKKHRCEVCGKDFHRAYYLIEHRRSHTGERPFECVICGKTSSTKTNHNKHIKIHHARDLQTSEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-