Basic Information

Insect: Symmerus nobilis
Gene Symbol: -
Assembly: GCA_027564815.1
Location: JANTOP010080526.1:1469-7751[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.9 66 4.3 2.1 2 21 191 210 191 213 0.82

2 9 0.0047 0.17 12.5 3.8 1 23 219 242 219 242 0.95

3 9 0.046 1.6 9.4 3.2 1 23 247 269 247 269 0.98

4 9 5.5e-05 0.002 18.6 0.9 1 23 275 297 275 297 0.98

5 9 4.9e-05 0.0017 18.8 0.2 1 23 303 325 303 325 0.96

6 9 3.9e-06 0.00014 22.2 1.0 1 23 348 370 348 370 0.99

7 9 0.0061 0.21 12.2 3.8 1 23 376 399 376 399 0.96

8 9 2.7e-06 9.5e-05 22.7 0.2 1 23 409 431 409 431 0.99

9 9 4.4e-06 0.00015 22.1 0.2 1 23 437 460 437 460 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.9	66	4.3	2.1	2	21	191	210	191	213	0.82
2	9	0.0047	0.17	12.5	3.8	1	23	219	242	219	242	0.95
3	9	0.046	1.6	9.4	3.2	1	23	247	269	247	269	0.98
4	9	5.5e-05	0.002	18.6	0.9	1	23	275	297	275	297	0.98
5	9	4.9e-05	0.0017	18.8	0.2	1	23	303	325	303	325	0.96
6	9	3.9e-06	0.00014	22.2	1.0	1	23	348	370	348	370	0.99
7	9	0.0061	0.21	12.2	3.8	1	23	376	399	376	399	0.96
8	9	2.7e-06	9.5e-05	22.7	0.2	1	23	409	431	409	431	0.99
9	9	4.4e-06	0.00015	22.1	0.2	1	23	437	460	437	460	0.93

Sequence Information

Coding Sequence: ATGAACTCAAATAAAAATCGGGAAATACAGAAGATCTGCAGAACTTGTATTCGGGCAATAGAAGGGAACCAGGAACCATCGATTCAATTAAGCGAAATCGGTGATTGGAAATTCACTGAATTGATAATTTTACAATTGGACATTACATTGAATGATGGATTACCGCAGCAGATTTGCCCAAACTGTTCATCTATCCTCGATAAATTTTCCATGTTCTATCAGGAGGCTAAGAGATCCCAGATAATTCTACGGAAGCTATTTAATCCTGGAGGTGATAGAAAATCCGGTTATCTCTATGCAGGGGAACCTAATCCATTATCAGATGAATCCATTAAAATTGAACCAATGAAACTGGGGAATTTAGACATCGGACAACTTCACGATAGTCTGATCAGTAGTACGGAGGAAATGGGAACGTGGCAACAATTAAATTCGAATAAAACGGATTTGATTGATCGGAAAAATGACGACACAACCGAAAAAAATCAATTTCCTGATGAACACAAGGAAGAGATTTTAATAATTGAAAAAATAAAGAAAAAACGTACAATTGACCGGTCCAAATATAATTATTGTAAATTATGTCAATTATCCTTTAAATCAGCTCATTACCGGCTGTTACATAATTTACAATTTCATCATGACGGAACGATGCATCAATGTAATGAATGTAATCAGTCATTTATGACCGTTAAATTATTAAACAATCATAAGAAACAGAGGCATCCGACAACCACATTCGTTTGTCGGCATTGTAATGCAATATTTCGTAATGAGGCTAACTATAAATTCCATTTGAAACGACATGATCCGAATAAGAAATTCAAATGTCAGTTCTGTGACAAATCTTTTGTTTCCCGTTTAGCGTTAACcaatcatgagaatgttcataccggcgataaaccttatctatgtgatttatgtgggaaaGAATTTAAACAAGGTGGAAATTTAGCGCAACATTTACAATCCCATAAGAGTGAAGCAACGTACGCGTATGATATTGATGGGAAAGTAATCGAAAAAACGGGTCGAAAACTCTACCaatgcgattattgtggtaaaaatttcgtccataaagccggtatggcattacacattcgtaagcatacgggtggtgaaccgtataaatgtgatttatgcgatcaccgatacgtacaattgaaagagttaaaagaccatCGTCAACATATTCATGGTTGTACAGCGCCCGCAATACCATCATATCAATGTTCGATATGCGGTAAGGGATTTCGTATACCATCCGCTCTATCGTCTCACCTCAAGAAACATACGGAACAACGGAACTACGTATGCCAAGAATGTGGTGCTTCTTTTAAGCGACCCACTCATTTACGTATCCATATCGATGGCGTTCATTTAGATGTACGACCGTATCCGTGTACGCAAAGACAATCGATACAAGTTACCCAATCGACCGATGTTACGGTCGTCCATTCGGAAGCCATTCAATTAAAAATTAGAAAAATGATAAATCGGCGAATCAAGAAGTTGGAAAAGGTTCTCAAATATCTTCGTAAGCATTGGCTCTCTGCCGACGAACAACAATTTTTGTTGGAACAACAGAAGTGGCCCGTCCTTCCATCCTTAAATCTATTATTCGGCTCCTCAAAATTAACCACGGATTTGAAGTTACAATGTCGCACCTGTATGCGATCGATAGGAATCGAAGAAAGAAGTGTCCCGTTGTTTGGGAACCGAACCTTTAAGGAATTGAAACGATTGGATTTAAAGATTAATCCAAATGATGGGTTGCCACAGCATATCTGTTTCCGGTGTGCCACTATACTGGAAGATATGGAAGCTTTTCGATTACAGTCAACTTCGGTTCAAAATATTCTACGGACCGCTTGTAACAAAATGGATAAGGATGAATCAACCATGGATCAGACTCCTTTTGAATATTGTAATGTGGAACCAATTGAAACTGTATTTGTAGATGGTGAACCTAATTCAATGGATATTGAACCCACTGAAATGGTTATGTTTCAGGAATCTAGCTTATTGGATCATGAGTATTGTAAAATACCGACAGCAGTATCAACGTCTCGTTTACAAAAAAAGAAAGAACAAGTTGAGGTGGCGGTAAATTACAGCAACTTCAAGTTTCGTTTAGTAGACGATTTATTTAAAGGTAGTTGA
Protein Sequence: MNSNKNREIQKICRTCIRAIEGNQEPSIQLSEIGDWKFTELIILQLDITLNDGLPQQICPNCSSILDKFSMFYQEAKRSQIILRKLFNPGGDRKSGYLYAGEPNPLSDESIKIEPMKLGNLDIGQLHDSLISSTEEMGTWQQLNSNKTDLIDRKNDDTTEKNQFPDEHKEEILIIEKIKKKRTIDRSKYNYCKLCQLSFKSAHYRLLHNLQFHHDGTMHQCNECNQSFMTVKLLNNHKKQRHPTTTFVCRHCNAIFRNEANYKFHLKRHDPNKKFKCQFCDKSFVSRLALTNHENVHTGDKPYLCDLCGKEFKQGGNLAQHLQSHKSEATYAYDIDGKVIEKTGRKLYQCDYCGKNFVHKAGMALHIRKHTGGEPYKCDLCDHRYVQLKELKDHRQHIHGCTAPAIPSYQCSICGKGFRIPSALSSHLKKHTEQRNYVCQECGASFKRPTHLRIHIDGVHLDVRPYPCTQRQSIQVTQSTDVTVVHSEAIQLKIRKMINRRIKKLEKVLKYLRKHWLSADEQQFLLEQQKWPVLPSLNLLFGSSKLTTDLKLQCRTCMRSIGIEERSVPLFGNRTFKELKRLDLKINPNDGLPQHICFRCATILEDMEAFRLQSTSVQNILRTACNKMDKDESTMDQTPFEYCNVEPIETVFVDGEPNSMDIEPTEMVMFQESSLLDHEYCKIPTAVSTSRLQKKKEQVEVAVNYSNFKFRLVDDLFKGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -