Snob004761.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010009894.1:28246-31957[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.01 0.36 11.5 1.4 3 23 180 201 179 201 0.96 2 14 0.00026 0.0092 16.5 0.1 3 23 239 260 238 260 0.97 3 14 0.061 2.2 9.0 0.4 1 17 265 281 265 282 0.94 4 14 2.7 94 3.9 0.7 1 16 289 304 289 305 0.89 5 14 0.0015 0.054 14.1 0.4 2 23 446 468 445 468 0.97 6 14 0.68 24 5.7 0.2 6 23 477 494 477 494 0.98 7 14 0.0069 0.25 12.0 0.5 1 23 500 522 500 522 0.93 8 14 0.0023 0.081 13.5 0.3 1 23 529 552 529 552 0.96 9 14 8.3e-07 2.9e-05 24.3 0.2 1 23 561 583 561 583 0.97 10 14 0.0029 0.1 13.2 0.6 3 23 591 612 589 612 0.96 11 14 0.00035 0.012 16.1 1.5 1 23 620 642 620 642 0.98 12 14 0.0045 0.16 12.6 0.7 2 23 648 670 648 670 0.96 13 14 0.025 0.88 10.3 1.2 1 23 675 697 675 697 0.98 14 14 0.00029 0.01 16.3 3.8 1 23 703 726 703 726 0.97
Sequence Information
- Coding Sequence
- ATGATTTGCCGATTGTGTAATATCGAGACAGAAAATGGAATAAATATTTTTGGATCGAATGAAGTTAAATTATCCATAGCACAGATTTTAATTCAATATTTTCCTATTCAGTGCATTGAAGGTGATAGTTATTCAAAAATCATTTGTAAAAAATGTTGGGAAATAACCGATCAATTTCACAATTTATACCGTACTGTTCAAGAGATAGAGGCTGGATTGAAATTAAAGGAAAATATAGATACTGAATTCCATAAGGAACCACTAACTATCATCGATATTAAACAAGAAAATGAGATTACCGATCCTGATACAAAAACATGTCCAATTATTCCAAACGTCACAGTACCACTACTATTAGAAAATGTTAAAATTGAGAATTTACCAAAGTCCACCGAAGAAGATGATGTATGCGTTTTTAATATTCATCCCTATCTGGAGCAAGAATCAGATAAAATTGGAACGAAAAATATTAGACGGATACCGAATAGGAAACGGAAGATTTTTCGAAAATCGTATCCGCAAAAGTACTATCGAATATGTGACTTTTGTTCACAAATATTTACCACTCTTAAATTATTGGTTAAACATCACGAAACAGAACATAAGGACATACCATTAGGAAAGCATCAATGCACAATTTGTGGGAAATGGTTAGCTCATGCCAATAATGGATTAAAACGGCATATGTTACAGCATAATGCGACACAGGAAGCGTGCAAGATATGCGGTAAAGTAACACCAAGCGTAATCGCTTTAAACAACCATATGCGATCGATGCACAGTGGTCGGACATTTCAATGTAAAATGTGTTCGAAAGTTCTCAAATCCAACAAATCTCTTAAGATTGATGATATTTCCCCAAAATTTGTTTGTAAAAAATGTTGGAAAATAACTGATCAATTTCATAATTTATATTGCTCCGTCCAGGAGAATGAAAATAAATTTAAATTAAAACAAAATAAAGGATTCGAGCAATCAACCACTGAACCGTTCCTTTACTACAGTATAAAAGAAGAAAATGATATGGATATTGTTGAACCCGAACTGGTTAAGGAAGTAGATGCAATATCAACCGACCATCTCGTAAAAAATGTTAAAATTGAAGATTCATTAAATACTGAAAATAATGAGAAATTTATATCTAGTCAATTTCCTAACGGAAAAATTTCAGATAAAATATTGAATACCAAAATTAAAAATATATTGAAACGTAAACCGAAGAATTCAATGAAAGATTTAAAACTGCAATCGACAATGATTGCCGTTAAAAAAAACTATGTAAGCAAAAATGAAATAATTGAACAAGAAGAAAAAATTCGGAATGAATTGGAAATTAAATGTGAAATTTGTAATGAACAATCTGCATCATTTTCAAAATTAAAAAGTCATATCAGATCAGTTCACAGTATTACAGGGTACATAAGATGTTGTGGAAAGAAATACTTCCGGCGAGGTAAAATTTATGCCCACATTCGGGACCATAGTAACTTTGGAAAATATAAATGTGACAAATGTGATAAGATTTATGTAGATAAAGCCCGTTTTGATGCCCACGTTTTTCTTCACGATCCAAAATCCAGAAAACATCCTTGCAACATTTGTTTAAAAAGATTTTTGTCACCATCAGCGTTAAAAGATCATTTGATTACCGTACACAGTACGACAGACGCAATCAAAAATTTTATTTGCGATATTTGTGGAAAATCTTTCATAACAAAAAAATGGTTGAGCGCCCATATGGATTCCCATTCCCAAAAATACCACCAAATATGTGACGTATGCGCCCGAATATTTAACAGTCGGAAATTATTAAACGAACATTATAAAACGAAGCATATGGGAATCCCGTTACCAAAACATCAATGCACCATTTGTGGCAAATGGATGACAACCAATTCATCATTAAAATGGCATCAACGGATACACAATGCTAAAGAGGAAACGTGCCATATTTGTGGAAAGCACGCACCAAATATTAATGCATTGAACGATCATATTCGATATGTTCACAGTGGTCGGGTATTTCAATGTCAAATGTGTCTGAAATTACTTAAATCACGAAAATCTCTTAAGGAACATTTGGCTTCTCATACTGGTATTTCGTTATATAAATGTCCATACTGTTCAATGGAATTTAATTCTAATGGAAATATGTGTAAGCATAGGAAAAATATGCATCTACTTGAATATCAGAGGGATCGTGAGAGACGGTTAATTAGCAGTACTAATTCTGTCACCTCCTACACAAATATATCAACGGATAATTTTGTTGAAATACCGAAATCTTAA
- Protein Sequence
- MICRLCNIETENGINIFGSNEVKLSIAQILIQYFPIQCIEGDSYSKIICKKCWEITDQFHNLYRTVQEIEAGLKLKENIDTEFHKEPLTIIDIKQENEITDPDTKTCPIIPNVTVPLLLENVKIENLPKSTEEDDVCVFNIHPYLEQESDKIGTKNIRRIPNRKRKIFRKSYPQKYYRICDFCSQIFTTLKLLVKHHETEHKDIPLGKHQCTICGKWLAHANNGLKRHMLQHNATQEACKICGKVTPSVIALNNHMRSMHSGRTFQCKMCSKVLKSNKSLKIDDISPKFVCKKCWKITDQFHNLYCSVQENENKFKLKQNKGFEQSTTEPFLYYSIKEENDMDIVEPELVKEVDAISTDHLVKNVKIEDSLNTENNEKFISSQFPNGKISDKILNTKIKNILKRKPKNSMKDLKLQSTMIAVKKNYVSKNEIIEQEEKIRNELEIKCEICNEQSASFSKLKSHIRSVHSITGYIRCCGKKYFRRGKIYAHIRDHSNFGKYKCDKCDKIYVDKARFDAHVFLHDPKSRKHPCNICLKRFLSPSALKDHLITVHSTTDAIKNFICDICGKSFITKKWLSAHMDSHSQKYHQICDVCARIFNSRKLLNEHYKTKHMGIPLPKHQCTICGKWMTTNSSLKWHQRIHNAKEETCHICGKHAPNINALNDHIRYVHSGRVFQCQMCLKLLKSRKSLKEHLASHTGISLYKCPYCSMEFNSNGNMCKHRKNMHLLEYQRDRERRLISSTNSVTSYTNISTDNFVEIPKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -