Snob003132.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010014536.1:1-3978[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7 62 4.5 0.7 2 23 204 226 203 226 0.94 2 15 1.7 60 4.5 0.9 6 23 235 252 235 252 0.96 3 15 3.6e-05 0.0013 19.2 1.9 1 23 258 280 258 280 0.99 4 15 0.00076 0.027 15.0 0.1 2 23 288 310 287 310 0.91 5 15 0.0017 0.059 14.0 0.2 1 23 320 343 320 343 0.98 6 15 0.023 0.8 10.4 0.3 3 23 351 372 349 372 0.94 7 15 0.001 0.037 14.6 0.9 1 23 380 402 380 402 0.97 8 15 0.00012 0.0043 17.5 0.7 2 23 408 430 408 430 0.96 9 15 0.019 0.68 10.6 0.2 1 21 435 455 435 456 0.94 10 15 0.00034 0.012 16.1 1.3 3 23 641 662 639 662 0.96 11 15 0.017 0.59 10.8 0.3 6 23 671 688 671 688 0.98 12 15 0.0016 0.056 14.0 2.2 1 23 694 716 694 716 0.97 13 15 0.005 0.18 12.4 0.5 3 23 725 746 723 746 0.94 14 15 2.2e-05 0.00078 19.9 0.1 1 23 755 777 755 777 0.97 15 15 0.0038 0.14 12.8 0.4 3 23 785 806 783 806 0.96
Sequence Information
- Coding Sequence
- ATGGTTGATAAACCTACAATAATTTGCCGGCTATGTACAGCTTACGCTCGAAATGGAATAGAAGTATTTGGGAAAAAAGGAGTCCAATTAACGATGTCAGCTGTGTTGCAACAACACTTCCCAATCCAGTTATCACCGACCGATAAACAGTGCTATGTAATTTGTAAGAAATGTTGGCGTATCACAGATCAGTTTCATAGGTTGTACTGTGATGTGGAACGTAACCAATGGACGTTTCAGGATCAGATACCCATAGAGAAGTTAGAAATTGAATTAAGTATTAAGGAGGAACAGTTAGATTTAAGGTCCGACCATAATCCTAATGAAACCCCGGGGTTACTTGAGGGCGAGAATTTTAAATTGAAAGTTGAAACAGTGGGACTTGATGAAATATTGGACGAACATGGATTGGACGATTTAGATAAACTGTCAGATGAGGATAATAATCAAGAAAATGAGGAAGCCACCACCACTGACACTGGACCATTGTCCGATACTTCACCCGGTACACATTTTAAAAAGTCGAAAAGGCACCAACCAACGAATTCGAATTCATTGAAAATACAGGCAGTTAAGGAGGATAATGAAATAGAAAAAATATTAGGTATACGATGTGAGATGTGTTACGTAAAAGCAGCAAATTTTATGGACCTAAAGAAACATTTTCGTAATAATCATGCTCTGAACGGTTACATTCGATGTTGTGAAAAGAAATTCTTTCGTCGCACGAGATTGTATAATCACATTTTAGATCACAGTAATCCTTCCCGTTACAAATGTGAATTTTGTGATAAAATCTATGTGGACAAGGAACGGTTAACGAAACATTTAAAACGACACGATCCATCAATGAAAAAACTACAGTGTAGTGAATGTCCGAAACGATTTGAATATCAATCTCTTCTGGATGTCCATGTGTTAGGTATACATCGTCGTATGGTCGATTCAGCGAAATCTTTTGTTTGTGATATTTGTAGTAAAAGATATGTTTCGAAAATGGCCATTTCCTCCCATATCAACACCGCACAtgcccaaaaatattcgcaaatttgtgatatttgtgctcgggtatttaacagtcgtaaATTATTAGACGATCATTATAAAGCAAAGCATATGGGTATCCCATTACCCAAACATCAATGCACAATTTGTGGATCGTGGTTATCGACCAATTCCGGATTGAAGCGACATATGCGTGGGCACGATGGGAAAGTAGAAACGTGTCATATATGTGGTAAGACAACACCAAATATAAACGCATTGAAAAATCATATACGGTACGTACATAGCGGTCGCGTTTTTCAATGTCAAATGTGTTTGAAATTTTTCAAATCTGGAATATCACTTAAGgaacacattgCGATGGATAATAATTCCAAAATTACGTGTCGTTTATGTAATGTGGCAACGACAACAGGAATAGGAATATACGGGACACAGGGTGTGAAATTATCGATGGAAAAAATATTAACCCAGCACTTCGATTTACAGGTCCACGAACATGATAATTTTTCGAAAATAATTTGTAGGAAATGTTGGAAAGTAACCGATCAATTTCATAATTTATATTGCACAGTTCAAGAAATAGAAACTGCGCTGAAAGAAAATGAAGTAAAGCAGGAAATTGGTTCTACGACAGATAAGACGCCTGGCTTTATACCATCTGACATATCAAGTGAATATCTTTTGCGAAATGTCAAAATTGAAGATTTACTTAATAGTGCATATGTAACTGAACCCATTTCTAACGGAAATAAAAATTCGATTTTGAAAAAAATCAATCAGAAAAGGGTAAAGAAAATTCTACAAAAAGATGTAAGGAAACACCCAACCACGGTTACTGTTAAAAAGAATTTCTATACCAAGGAAGAATTGATTCAACAAGATGAAGAAATTAACCGTGAACTGGAAATGATATGTGAAATTTGTAATGAAAAATGTACATCATTTACAAATTTAAAAATTCATATCCGATCAGTTCATAGTATTAAGGGATTCATACGATGTTGCGGGAAAAAGTTCTCTAGACGTGGAGAAATATGTGCGCATATTCAGGACCATAACAGCTTCGGAAAATATAAATGTCACACGTGTGATAAGATTTACATCGAtaaagcacgttttgatcgacatatttcgcttcacgatccaaattcgaaaAAGCATTTATGTAACATTTGTTCAAAACGATTTTTATCGCCCTCAGCATTAAACGACCATTTGATTTCTGTGCACCGAACATCAGATGCAACTAAGAGTTTCATATGTGATATATGTGGAAAAGCTTTCATAACAAAAAAATGGTTGGGTTCGCATATGGTTTCGCATACACAAAAATACCATCAAATATGTGATATTTGTGCCCGAGTATTTAACAGTCGGAAATTATTGGATGAACATTATAAAACACAGCATATGGGGATCCCATTACCAAAACAACAATGCACAGtatgtgtaaatctcttaaggaacataatgcatctcatactg
- Protein Sequence
- MVDKPTIICRLCTAYARNGIEVFGKKGVQLTMSAVLQQHFPIQLSPTDKQCYVICKKCWRITDQFHRLYCDVERNQWTFQDQIPIEKLEIELSIKEEQLDLRSDHNPNETPGLLEGENFKLKVETVGLDEILDEHGLDDLDKLSDEDNNQENEEATTTDTGPLSDTSPGTHFKKSKRHQPTNSNSLKIQAVKEDNEIEKILGIRCEMCYVKAANFMDLKKHFRNNHALNGYIRCCEKKFFRRTRLYNHILDHSNPSRYKCEFCDKIYVDKERLTKHLKRHDPSMKKLQCSECPKRFEYQSLLDVHVLGIHRRMVDSAKSFVCDICSKRYVSKMAISSHINTAHAQKYSQICDICARVFNSRKLLDDHYKAKHMGIPLPKHQCTICGSWLSTNSGLKRHMRGHDGKVETCHICGKTTPNINALKNHIRYVHSGRVFQCQMCLKFFKSGISLKEHIAMDNNSKITCRLCNVATTTGIGIYGTQGVKLSMEKILTQHFDLQVHEHDNFSKIICRKCWKVTDQFHNLYCTVQEIETALKENEVKQEIGSTTDKTPGFIPSDISSEYLLRNVKIEDLLNSAYVTEPISNGNKNSILKKINQKRVKKILQKDVRKHPTTVTVKKNFYTKEELIQQDEEINRELEMICEICNEKCTSFTNLKIHIRSVHSIKGFIRCCGKKFSRRGEICAHIQDHNSFGKYKCHTCDKIYIDKARFDRHISLHDPNSKKHLCNICSKRFLSPSALNDHLISVHRTSDATKSFICDICGKAFITKKWLGSHMVSHTQKYHQICDICARVFNSRKLLDEHYKTQHMGIPLPKQQCTVCVNLLRNIMHLIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -