Basic Information

Insect: Symmerus nobilis
Gene Symbol: Prdm14
Assembly: GCA_027564815.1
Location: JANTOP010025482.1:7518-9585[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.014 0.49 11.1 0.1 1 23 168 190 168 190 0.97

2 11 8.5e-06 0.0003 21.2 1.4 2 23 192 213 192 213 0.97

3 11 4.2e-05 0.0015 19.0 0.4 1 23 292 314 292 314 0.97

4 11 0.00011 0.0038 17.7 0.7 1 23 329 351 329 351 0.99

5 11 0.034 1.2 9.9 1.1 1 23 362 385 362 385 0.96

6 11 5.1e-05 0.0018 18.7 0.8 1 23 406 428 406 428 0.98

7 11 2.1e-05 0.00076 19.9 0.6 1 23 442 464 442 464 0.96

8 11 0.00095 0.034 14.7 3.0 2 23 471 492 470 492 0.97

9 11 7.8e-05 0.0027 18.1 0.9 1 23 498 520 498 520 0.97

10 11 0.0044 0.15 12.6 0.5 1 23 526 549 526 549 0.95

11 11 0.00038 0.014 16.0 1.4 1 23 555 577 555 577 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.014	0.49	11.1	0.1	1	23	168	190	168	190	0.97
2	11	8.5e-06	0.0003	21.2	1.4	2	23	192	213	192	213	0.97
3	11	4.2e-05	0.0015	19.0	0.4	1	23	292	314	292	314	0.97
4	11	0.00011	0.0038	17.7	0.7	1	23	329	351	329	351	0.99
5	11	0.034	1.2	9.9	1.1	1	23	362	385	362	385	0.96
6	11	5.1e-05	0.0018	18.7	0.8	1	23	406	428	406	428	0.98
7	11	2.1e-05	0.00076	19.9	0.6	1	23	442	464	442	464	0.96
8	11	0.00095	0.034	14.7	3.0	2	23	471	492	470	492	0.97
9	11	7.8e-05	0.0027	18.1	0.9	1	23	498	520	498	520	0.97
10	11	0.0044	0.15	12.6	0.5	1	23	526	549	526	549	0.95
11	11	0.00038	0.014	16.0	1.4	1	23	555	577	555	577	0.99

Sequence Information

Coding Sequence: ATGGAAAAGTCGATGTCCTTTTTCCCTTTATTCGTCGATAGCGATGAAGCAAACGTAATCTATTTCACAAAATACGGTACAATGATATCTGAATACATATTTGACGAGATTCATCCAAATTCAAATTATCCTGGATTTATATGTGAAGTATGTAATGTAAAATTATATGAATTTAAGGAATTAAAGGAAATGGCAATCACGACTAATACACATATAACAGAGATGTTGATGGAAACTGAGATCTCATCCGACGAAACTATAAAAGACGTCTTCAAGGAAGGACAGGCGATAGATTCAAGGGAATTTATAGATACCAATTACTTAAAAAATGAAATTTCATCACCTTCATGTTTGAATATGATAAATACGgaattattctcaaatattgaaatggatcagaagtccctcgttagcatggaatttaattcagccaatgaattaaaTGAATCAGGCCACAATACATCAGAACTCAACCATTCTATTTTAGAGAAAAATCAGAAGTTTCGATGCAAAATATGTTTGATTGTTTTTGATAATGGTATTAGTTTGGAAGAACATTTGAATGAACATCCAACTTGTCCCATTTGTAACCGTACATTTGTTAAGAAGAAAAATTTAAACATTCATCTCACTAAGCATTTTACTGATACAATAAAGGAACAGCAACAAGGTACTTCTGAATCAATGACATCAAGAACTCTGTCGGATATATTAAAAGGGGAAGAATGTATAGATAATGAGAGTGATTTAGTTAATGGTCCGGTTGAATATTGTTCGTATGAAGTTGTAGAATATATTGATAGCTTGGATGAATATAGTCTACTAAACGGTACTCAAACATCAGCAGGACCTAATTCAAATTTTAATGAAAGATTTGCATGTACCCTATGTGATCGTACATATGTAAATAAAAGATCTCTATTGGCGCATTTAAGAGATCATAACAACAAATCAAACATTGACGTAAATATGAATATGGATTTATTCCAATGTGAAATATGTAATCGTGAATTTTTGGATAAGCGAAACCTTTCTATTCATCTACAAACACATTTGGTAATTAAATCTAACCCAAAAGAGATATTCGCATGTTCATTGTGTGATAATGAGTATGCACACCAACGATCTTTAGATTACCATATAAACAGAAATCACGGCTTCCAAGATCATAATTTAATCAAATCTTTCGATAACGATAACCCGAATGTCAAAAAATTTCCTTGTACATTGTGTAATCGATCATTTGTATCCCGAAGAAATATGAGTATTCATTTATTGACTCATAATTCGCCTCCTAAAAAACGTCGTGCACAACCAAAAAGATACGTATGTATGACGTGTGGTAAGAAATTCGCTACTCCAAGCACACTTCGGGAACATGAATTCCGTCATAAAGACGAACGGCCTATCGAATGTGAAATTTGTCACAAACATTTTAAGATGATGAAAGATCTGCTGATAcatagacgaatacatacgggggaaaggaaatttgtttgtgatgaatgtggcaaatccttttacatgattcgtcaattaaagaatcataaggaaagtcatTCGGATGTTCCATTATATGAATGTAATATTTGTTTTCGTAAGTTGAAAACTCGAAATACACTCGATAGTCACATGGCAGAGGTTCATAAGAAGGCTGGACAATATCAATGTGGCATCTGTAATGCACCGTTTGGATTGAAACATCGTTTAACTAAACACATGAAAAGTCATATTAAGAAAGGAATTATAAAACGAGATCAAGTTGAAGACTACATAAAGATCAATCCAATATTTTGA
Protein Sequence: MEKSMSFFPLFVDSDEANVIYFTKYGTMISEYIFDEIHPNSNYPGFICEVCNVKLYEFKELKEMAITTNTHITEMLMETEISSDETIKDVFKEGQAIDSREFIDTNYLKNEISSPSCLNMINTELFSNIEMDQKSLVSMEFNSANELNESGHNTSELNHSILEKNQKFRCKICLIVFDNGISLEEHLNEHPTCPICNRTFVKKKNLNIHLTKHFTDTIKEQQQGTSESMTSRTLSDILKGEECIDNESDLVNGPVEYCSYEVVEYIDSLDEYSLLNGTQTSAGPNSNFNERFACTLCDRTYVNKRSLLAHLRDHNNKSNIDVNMNMDLFQCEICNREFLDKRNLSIHLQTHLVIKSNPKEIFACSLCDNEYAHQRSLDYHINRNHGFQDHNLIKSFDNDNPNVKKFPCTLCNRSFVSRRNMSIHLLTHNSPPKKRRAQPKRYVCMTCGKKFATPSTLREHEFRHKDERPIECEICHKHFKMMKDLLIHRRIHTGERKFVCDECGKSFYMIRQLKNHKESHSDVPLYECNICFRKLKTRNTLDSHMAEVHKKAGQYQCGICNAPFGLKHRLTKHMKSHIKKGIIKRDQVEDYIKINPIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -