Snob002127.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010054353.1:1-7333[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.022 0.78 10.4 0.3 2 23 188 210 187 210 0.95 2 22 0.91 32 5.3 0.5 6 23 219 236 219 236 0.97 3 22 0.00086 0.03 14.9 4.3 1 23 242 264 242 264 0.99 4 22 0.002 0.069 13.7 4.1 3 23 273 294 272 294 0.98 5 22 0.0012 0.044 14.4 2.5 2 23 304 326 303 326 0.92 6 22 0.0016 0.057 14.0 2.4 1 23 332 355 332 355 0.95 7 22 0.0042 0.15 12.7 0.2 2 23 364 385 363 385 0.97 8 22 2.7 97 3.8 0.7 2 23 592 614 591 614 0.93 9 22 6.1e-05 0.0022 18.5 3.1 1 23 646 668 646 668 0.98 10 22 1e-05 0.00036 20.9 0.5 2 23 676 697 675 697 0.95 11 22 0.00011 0.0039 17.7 1.2 1 23 706 729 706 729 0.93 12 22 0.012 0.42 11.3 1.0 1 23 735 757 735 757 0.95 13 22 0.00048 0.017 15.7 2.9 2 23 792 814 791 814 0.95 14 22 0.069 2.4 8.9 0.2 2 14 819 831 819 833 0.91 15 22 0.036 1.3 9.8 1.1 2 23 998 1020 997 1020 0.96 16 22 4.7 1.7e+02 3.1 1.4 6 23 1029 1046 1029 1046 0.98 17 22 0.00036 0.013 16.1 4.1 1 23 1052 1074 1052 1074 0.99 18 22 0.00094 0.033 14.7 2.0 2 23 1082 1103 1081 1103 0.96 19 22 0.0051 0.18 12.4 0.9 2 23 1113 1135 1112 1135 0.90 20 22 0.0083 0.29 11.8 1.1 1 23 1141 1164 1141 1164 0.94 21 22 0.094 3.3 8.5 0.4 2 23 1173 1194 1172 1194 0.92 22 22 2.4e-05 0.00086 19.7 3.7 2 23 1200 1222 1199 1222 0.97
Sequence Information
- Coding Sequence
- ATGGAGTCCCGAACATGTCGATTATGCGACAGTAAAACCTCGACCGGATTTAAAGTATTCGGTAAGCGTGGTAGGCAACTAAACATCCAGCCAATAATCTTACAACATTTTACATTAGAATTCACAGATAACGACGGATTATCAAATTATATTTGCCGAAAATGTTGGCGAACTACCGATAATTTTCATAAACTTTACTGCAACGTATTGAACAAATTGAACGGACTAACAGAGAAGTGTGTATCAAATAATGAAATTAAGGTTGAGGACTTAGTTTATGAACAGACCAATGAGAAAGTATCAGAGGAAGTTGTTGGAAATTTAGAAACGGCCTTAAAATCGGAAGAACTGTTCAAGACAGATGATGGAATTGATGGTAATAATCAATCTACTAGCTACGATATCCCCCAGCCACTACAAACAAAAAGTAATTTGATTCTAACTAATTTAAGAGAAGCTACCGAGAACAACGACCATACATTAAATGTTGTTGACCGAAAAATTGCGAATCGTAAAAGATTCACCGATCAAAATACAGAAATCTCCAACTTTCTGGGAATCAAATGTGAAATTTGTCTTTTCCCAACCGAAACATTTTCCGAATTAAAAAGACATATTAAGTTGGAGCATCAAAAAGCGGGCTACTTAAGGTGTTGCAAGAGAAAGTATTATCGACAAAATCTACTGTATAATCATATAATAAATCATCGTTTTCCAAATAAATACAAGTGTGACGTATGCGATAAATCATTCCTTGACAAATATTGTTTGACCGAACATAAAAAAACTCACGATCCATCGAGAAGGAAACTCCTATGTCCGCACTGCCCGAAACGATTCGAATATAAAAGTTTTTTGGATCTACACATTCGTCGATGTCATGTGGACGAAGTGGCACGAAAATCATGTGTATGTGATATATGTAAAAAATGTTTTAGCACAAAATATGCTGTAGCTGCTCATTTATATAACGTCCATGCGGATAAATCAAATCATATATGTGATGTATGTGCGAAAGTGTTCAAAAAACGAGTGCAATTAGAGCATCACTACCAAATCAATCATACCGGTATAAAGAAAGAAAAGATTCAATGTACAATATGTGGCGTATGGTTAACTGATAATTATGGTTTACGGAAGCATATGCAGCGCCATGAAGGTACAGAGCAAGCGTGCAGTTTGTGCGAGAAGATTGTGAAGAAAATGGTGAACCAAAGAACTACCTGTCGATTATGTGATAAGCAATCATCCACTGGAATGACCATATTCGGAGAACGTGGAATAAAATTGAATATTCGACCGATTATACTACAACATTTTGCTATAGATTTTAAGCAAGATGATGGTGCATCGGATTTTATTTGTCGAAAATGTTGGCGAACCATCAACAATTTTCATCAACTTTACTGCAACGTAAAAGAGACTTTCGGGACACAAATAAGCCCGACTAAGAAGAATGAGATTAAAAATGAGAAAACCTCGCTTATTGAAGAAACGAATTTTTTGGAATATGTTGCAGTAAATGAGAATGTTAGGAATTCAGTAAAATCCGAACTTCAGTTAACAGATGATGAAGTAATTGATTATGATCATACTGAAGATTTATTAGACACAAATTATAATCAGCCAGTAAAAATACAGAGAAAATTAACGCTAACATCTAGAAAACCGGAGACTATGGATATTAAAGACAAATCTGTTGGTATAAAACAAGCATCTAATcgtttaaaattcgcagaacaaaataagcagatatccgacttcatcgggattcaatgtgatatttgTTTTCTCACAATGGAAACATTTACCGAATTAAAGAAACATTTTATATCAAAGCATGGTATCACCGGATATTTGAGATGTTGTAAAAGGAAATATTTCCGTCAAAATCGATTGTATCTTCACATACTTAATCATCGTTCTCCAAATCAATATATGTGTGATAAATGCGATAAATCATTTATCGATAACGTTTGTTTGCGGGAACACAAAAAAACCCACGATCCGTCGAGAAGAAAACTTCCATGTCCACATTGTGGAAAACGATTCGAATATAAGAGTTCACTAGATAAGCACATCGGAATTCATATAGATGTAGATCCAGGAACACCATATACTTGTGACATTTGCGGTAAATGTTTCAGGACAAGAACGGCTATAGCTGCTCATTTATTTAACATGCATCGGGATAAGGGACGACATATATGTGATGTATGTGCTAGAGTGTTTCGAAGTCGTAAGAAACTGGACGATCACCAAATCAATCATTTGGGTATCGTTCAACCAAGAGTTCAATGCAAGATATGTGGGGTATGGCAATCGAACAAATACTTAAGACATCACATGAGACGTCATGTTCAGAATGAACAAGAATGTACCATTTGCCGGAAATCGTTTGCCAATCGTGATTGTCTTAATAATCATAGGAGCCGTGTACACGGTAAATCTCGTCAATGTCCAGTGTGTGATAAGGTGTTTGTAACGAAGAAAGGAATAAGTTTCAATGAGGATGACGGACTATCGAATCTCATTTGCCAGAAATGTTGGCGAACCACCAAACATTTTCATGAACTGTACTGCAATGTGAAAAACAATTTAAAAATACTAAACTGTTCGGCTGATAACCAGGAAAAGATAATAACTGATAGTTTTATCCTTAAGGATGAAATTAAAAATGAAGAATTAGATTTTTTTGAAGTAAAAATATTAACGGAGCATAGTCCGGTGATTGAAAATGCTGTATCAATTTCAAAAACGGAAGATTATGTAGCTGAGGATGAAGTAATTGAAGAAGATCATATCGAAGATGTATCTGCTCAGTTGGTAGCTACAGAAAATATACCCTGCCCGTCACCACCAAAACAAGACGTCATTAGCAAACCATCCGTAAAGCAAAAAATAAAGACCATTAAAGGTGATGACATAAAAATAGCTAACCGCTTAAAATTTGCAGAACAAAACAAGCAGATATCAGATTTCATTGGAATGCAATGTGATATTTGTCTACTGACATTGAAAACATTTACGGAATTAAAGAAACATTATAAGTCGGACCATGGCATCGTCGGATATTTAAGATGTTGTAAGCGAAAATATTTCCGTCAAAATAAACTGTATCTTCACATACAGAATCACCGTTTCCCGAATCAATACAAGTGTGATGGTTGCGATAAATCATTTCTTGATACGGATTGCTTACGGAAACATAAAAGAACCCACGATCAATCGAGAAAGAAACTTCCCTGCCCACATTGTACGAAACAATTCGAATATAGAAGTTTACTGGACCATCACATTGGAACCCATGAAGAGGGACATATGggaaaaccatgtatttgtgatatatgtaacaaaagTTTCAACACAAGAACAGCTATAGCTGCACATTTATTTAACATGCATACGGATAAGGGAACGCATATATGTGATGCATGTGCCAGAGTATTCCGAAGCCGTTCCCAACTAGATCAACACTACAAAATCAATCATATGGGTATCGTTGAACCGAAAGTACAATGTAAAATTTGTGGTGCTTGGCAATCGAACAAGTATTACTTGGGGAGACACATGAGACGCCATATAACTAATGAACAAACATGTACGGAATGCGGTAAAACATTTGCAAATCGAGAATGTCTTAATAATCATAGGCGACGGTCTCACG
- Protein Sequence
- MESRTCRLCDSKTSTGFKVFGKRGRQLNIQPIILQHFTLEFTDNDGLSNYICRKCWRTTDNFHKLYCNVLNKLNGLTEKCVSNNEIKVEDLVYEQTNEKVSEEVVGNLETALKSEELFKTDDGIDGNNQSTSYDIPQPLQTKSNLILTNLREATENNDHTLNVVDRKIANRKRFTDQNTEISNFLGIKCEICLFPTETFSELKRHIKLEHQKAGYLRCCKRKYYRQNLLYNHIINHRFPNKYKCDVCDKSFLDKYCLTEHKKTHDPSRRKLLCPHCPKRFEYKSFLDLHIRRCHVDEVARKSCVCDICKKCFSTKYAVAAHLYNVHADKSNHICDVCAKVFKKRVQLEHHYQINHTGIKKEKIQCTICGVWLTDNYGLRKHMQRHEGTEQACSLCEKIVKKMVNQRTTCRLCDKQSSTGMTIFGERGIKLNIRPIILQHFAIDFKQDDGASDFICRKCWRTINNFHQLYCNVKETFGTQISPTKKNEIKNEKTSLIEETNFLEYVAVNENVRNSVKSELQLTDDEVIDYDHTEDLLDTNYNQPVKIQRKLTLTSRKPETMDIKDKSVGIKQASNRLKFAEQNKQISDFIGIQCDICFLTMETFTELKKHFISKHGITGYLRCCKRKYFRQNRLYLHILNHRSPNQYMCDKCDKSFIDNVCLREHKKTHDPSRRKLPCPHCGKRFEYKSSLDKHIGIHIDVDPGTPYTCDICGKCFRTRTAIAAHLFNMHRDKGRHICDVCARVFRSRKKLDDHQINHLGIVQPRVQCKICGVWQSNKYLRHHMRRHVQNEQECTICRKSFANRDCLNNHRSRVHGKSRQCPVCDKVFVTKKGISFNEDDGLSNLICQKCWRTTKHFHELYCNVKNNLKILNCSADNQEKIITDSFILKDEIKNEELDFFEVKILTEHSPVIENAVSISKTEDYVAEDEVIEEDHIEDVSAQLVATENIPCPSPPKQDVISKPSVKQKIKTIKGDDIKIANRLKFAEQNKQISDFIGMQCDICLLTLKTFTELKKHYKSDHGIVGYLRCCKRKYFRQNKLYLHIQNHRFPNQYKCDGCDKSFLDTDCLRKHKRTHDQSRKKLPCPHCTKQFEYRSLLDHHIGTHEEGHMGKPCICDICNKSFNTRTAIAAHLFNMHTDKGTHICDACARVFRSRSQLDQHYKINHMGIVEPKVQCKICGAWQSNKYYLGRHMRRHITNEQTCTECGKTFANRECLNNHRRRSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -