Basic Information

Insect: Symmerus nobilis
Gene Symbol: -
Assembly: GCA_027564815.1
Location: JANTOP010088174.1:376-4480[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.4 2.3e+02 2.7 1.1 3 23 216 237 214 237 0.90

2 18 3 1.1e+02 3.7 1.2 6 23 246 263 246 263 0.97

3 18 0.00017 0.0061 17.1 3.5 1 23 269 291 269 291 0.98

4 18 9.2e-05 0.0033 17.9 0.9 1 23 298 321 298 321 0.97

5 18 0.00053 0.019 15.5 0.4 1 23 328 351 328 351 0.97

6 18 0.0033 0.12 13.0 0.6 3 23 359 380 358 380 0.94

7 18 0.0064 0.23 12.1 1.0 2 23 389 409 389 409 0.97

8 18 0.00028 0.01 16.4 1.4 2 23 415 437 415 437 0.96

9 18 0.0071 0.25 12.0 0.6 1 23 443 465 443 465 0.97

10 18 0.14 4.8 7.9 1.2 2 23 667 689 666 689 0.96

11 18 0.19 6.5 7.5 1.9 6 23 698 715 698 715 0.98

12 18 1.7e-05 0.00058 20.3 3.2 1 23 721 744 721 744 0.98

13 18 0.003 0.11 13.1 1.5 2 23 752 774 751 774 0.90

14 18 7.8e-05 0.0028 18.1 0.1 3 23 783 804 781 804 0.96

15 18 0.029 1 10.1 0.1 3 23 812 833 811 833 0.94

16 18 0.042 1.5 9.5 0.2 2 23 868 890 868 890 0.94

17 18 8.5e-06 0.0003 21.2 1.5 1 23 895 917 895 917 0.97

18 18 0.0032 0.11 13.1 2.2 1 23 923 946 923 946 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.4	2.3e+02	2.7	1.1	3	23	216	237	214	237	0.90
2	18	3	1.1e+02	3.7	1.2	6	23	246	263	246	263	0.97
3	18	0.00017	0.0061	17.1	3.5	1	23	269	291	269	291	0.98
4	18	9.2e-05	0.0033	17.9	0.9	1	23	298	321	298	321	0.97
5	18	0.00053	0.019	15.5	0.4	1	23	328	351	328	351	0.97
6	18	0.0033	0.12	13.0	0.6	3	23	359	380	358	380	0.94
7	18	0.0064	0.23	12.1	1.0	2	23	389	409	389	409	0.97
8	18	0.00028	0.01	16.4	1.4	2	23	415	437	415	437	0.96
9	18	0.0071	0.25	12.0	0.6	1	23	443	465	443	465	0.97
10	18	0.14	4.8	7.9	1.2	2	23	667	689	666	689	0.96
11	18	0.19	6.5	7.5	1.9	6	23	698	715	698	715	0.98
12	18	1.7e-05	0.00058	20.3	3.2	1	23	721	744	721	744	0.98
13	18	0.003	0.11	13.1	1.5	2	23	752	774	751	774	0.90
14	18	7.8e-05	0.0028	18.1	0.1	3	23	783	804	781	804	0.96
15	18	0.029	1	10.1	0.1	3	23	812	833	811	833	0.94
16	18	0.042	1.5	9.5	0.2	2	23	868	890	868	890	0.94
17	18	8.5e-06	0.0003	21.2	1.5	1	23	895	917	895	917	0.97
18	18	0.0032	0.11	13.1	2.2	1	23	923	946	923	946	0.98

Sequence Information

Coding Sequence: ATGGCTAGAAAAAATTATGTCAAATGTTATTTGTGCAGCAGAAAAATAAAAAATAATGGAATTGAGATTTTTGGATCCAAAGGATTAAAATTGAAAATTGAATCGATTTTATCTCAACACTTTGGGTTGCAGTTGATTGAATCAACCGGATCATCAAAGGTTGTTTGTCGTAAATGTTGGAAAATCACCGATCAATTTCATAAATTATATCGTCGGGTACAGGAGAATATTCCAGCGAATGATACCCTATCACAATTTCAATGTGAAAATGGAATAAATCCTTCAACGAAAGTTGAAATTAAATATGAGAATGAGCTGATAATACAAAATGATATGGACGATTCGTCCAGCAATGCTATGCCCGACAGTTCGGAACCAATTTTAAAAATCGAAGATGTACTGAATCCGATAACCGATGGAAAAATTAGTGATCTTTATGCGACACTGCCAGAAAAATCCCTTAATAATGATCAAGAAGTGAAAATAACAGAAGACGTACCGAGAGTGAAAAGAAAATATATCAAAAGATTTCATCGCGTAAATAAATCCAGACCGCGAACGGCACGAACTGAGAAAGAGCGAGCTGATCATCAATCGAAACTATTGTCGGAGGATACGGAAATTGATAATTTCATTGGAATATGTTGTGATATGTGCGGAAGGAAGGAGAGTTCATTTATCGGTTTGCGACAACATTTCCGAGCTGAACATCGAACAACCGGCTACTTAAAATGTTGCAAGAAGAAATTTTTTCGACGTTCGATATTATTAACTCACATTAAAGACCATAGCTGTCCCGATAAATACAGATGTGAACCGTGCAATAAATCGTACACAAATAGTTATTGCTTACGGGTTCATATTAAAACCCATGATCCCGATTTTAAATCATATCATTGCGCTGACTGTCCGAGACGTTTCGAAAGTAAAACATTATTAGCAAAACATATTCTTAAAGTGCATAGCAATGCACCAAAATTATTCGAATGCGATATTTGTAAAAAAACTTTCTTCACGAAAGGAACCGTTTCTGGTCACATATTAACCGTACACACAAGTCATTCGTTGAAATTTTGTGAATTGTGTGCAAAGATTTTTAAAAGTCAACAGCAATTGAAGAGTCACTATGCAATAACGCATATGGGAATGGAAGTGCCGAAAGCTGAATGTAACATTTGCGGTACATGGTTCAATAAGAGATATCTTCGACGTCATATGATAAGGCATGAGGGATTGGAAGCCACATGTAATGTTTGTGGAAAGAAGTCATCGAATAAACTGTCGTTACGGATACACATGAAAAATATGCATGGCGGCGGGaaaacgtatcaatgcaatttttgcgagaaaaaattcaaatcgggagttatattaaaggaacacattgccacacatactggaatcagtctAAGAGCAAATAATGGCATCGACATATTTGGACCGAAAGGAATTAAATTGTTAATGGCATCGATTTTAGCTCAGCACTTTGGATTTCAGTTAACTGAATCCAATTATGTATCGAAAACGGTGTGTCGTAAATGTTGGCAAATAACCGATCAATTTCATAAACTTTATTGTTCGGTGACCGAGAATCAAAAAATTTTACAACAGAACGGCCAATTAAAAAGTGAACATCCCAATATTACAAATCCATTAACAAGTAATGTTGAAATTAAACATGAAAATGAATTGATCATTCAACAAGATGATACGTCCAGTAATGTGGCACCAGACAGTTCGGAATCATATTTAAAAATCGAAGATTTTTTAGAAACAAAAACCGAAGAGAATATTCCTGAATTTATCGAGAAGAAGCTACCAGAAAAAATCATCGATATTATAGAAAACGTACACAAGGTACGAAAGATCAGAGGAACCTACACAAAGAGAGAGAAGAAACCAATCAGAATTCGAACGATTCGAACTGACGAACAGAAAGCGGATAGCCGATCGAAGCTATTATCAGAGGATAATGAAATTGAAAGTTTTATCGGGATACATTGTGATGTATGTGGGAGAAGAGAAAAATCTTATATCGCTTTGCGACGACACTTTCGAACCGAACATTTAATCAGCGGATATATAAAATGTTGTAACAAGAAATTTTTTCGTCGTACGAAATTGTTAACTCATATTAAAGATCATAACATTCCCGATAAGTACCGATGTGAACTTTGTAACAGATCGTACACCGATAAGGAATGTTTGGTTCGTCACATGAAGAAGATTCATGATCCCGCCTTTAAATCACTTCAATGCGATCATTGCCCTAGACGTTTTGAAAGGAAAACACTTTTAGATAATCATGTTTATGAAAGACATAGCAACGCACCGAAATCGTTTGGATGTGATATTTGTAATAAAACTTTTGTGACGAAAGACAACGTTTACAACCATATATTGGTCGTACATGCAAATAAATATTCGAAAATATGCGATCTATGTGCACAAATCTTTAAAAGTCAAGCATTATTAGAACAGCACTATGCGATAAAACATATGGGTATGCAGACACCGAAAGCAAAATGTAACGTATGCGGTACATGGGTTAATGAGAGAAATCTTCGATTTCATTTGGCAAGACATGAAGGATTGGGAGCTACATGCAATATATGTGGTAAACAGTCATTGAACAAAGTTGCTCTACGCAATCATATTCTGTACGTTCATGGTGGCAGGTCGTTTCAATGTAATTTCTGCGATAAATCATTTAAATCTAGAGTTACATTAAAGGAACATATTGGATCGCATACGGGTTTCAGTATGTATAAGTGTTCGTATTGTTCGATGGAATTTAAATCGGGCGCAAATATGTATAAACATAGAAAGAAAATTCATCCAAATGAATGGTTGGAAGATCATCGTAAACGGTTGGAAACGAAAACTAAATCGCACTAA
Protein Sequence: MARKNYVKCYLCSRKIKNNGIEIFGSKGLKLKIESILSQHFGLQLIESTGSSKVVCRKCWKITDQFHKLYRRVQENIPANDTLSQFQCENGINPSTKVEIKYENELIIQNDMDDSSSNAMPDSSEPILKIEDVLNPITDGKISDLYATLPEKSLNNDQEVKITEDVPRVKRKYIKRFHRVNKSRPRTARTEKERADHQSKLLSEDTEIDNFIGICCDMCGRKESSFIGLRQHFRAEHRTTGYLKCCKKKFFRRSILLTHIKDHSCPDKYRCEPCNKSYTNSYCLRVHIKTHDPDFKSYHCADCPRRFESKTLLAKHILKVHSNAPKLFECDICKKTFFTKGTVSGHILTVHTSHSLKFCELCAKIFKSQQQLKSHYAITHMGMEVPKAECNICGTWFNKRYLRRHMIRHEGLEATCNVCGKKSSNKLSLRIHMKNMHGGGKTYQCNFCEKKFKSGVILKEHIATHTGISLRANNGIDIFGPKGIKLLMASILAQHFGFQLTESNYVSKTVCRKCWQITDQFHKLYCSVTENQKILQQNGQLKSEHPNITNPLTSNVEIKHENELIIQQDDTSSNVAPDSSESYLKIEDFLETKTEENIPEFIEKKLPEKIIDIIENVHKVRKIRGTYTKREKKPIRIRTIRTDEQKADSRSKLLSEDNEIESFIGIHCDVCGRREKSYIALRRHFRTEHLISGYIKCCNKKFFRRTKLLTHIKDHNIPDKYRCELCNRSYTDKECLVRHMKKIHDPAFKSLQCDHCPRRFERKTLLDNHVYERHSNAPKSFGCDICNKTFVTKDNVYNHILVVHANKYSKICDLCAQIFKSQALLEQHYAIKHMGMQTPKAKCNVCGTWVNERNLRFHLARHEGLGATCNICGKQSLNKVALRNHILYVHGGRSFQCNFCDKSFKSRVTLKEHIGSHTGFSMYKCSYCSMEFKSGANMYKHRKKIHPNEWLEDHRKRLETKTKSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -