Basic Information

Insect: Symmerus nobilis
Gene Symbol: -
Assembly: GCA_027564815.1
Location: JANTOP010009095.1:6302-10487[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.078 2.7 8.7 4.2 2 23 290 312 289 312 0.94

2 20 0.57 20 6.0 0.7 6 23 321 338 321 338 0.97

3 20 0.00055 0.019 15.5 4.0 1 23 344 366 344 366 0.99

4 20 0.00088 0.031 14.8 2.4 1 23 373 396 373 396 0.97

5 20 0.0019 0.067 13.8 2.4 1 23 405 428 405 428 0.95

6 20 0.064 2.3 9.0 0.2 2 23 435 457 434 457 0.95

7 20 0.1 3.6 8.3 1.2 1 23 465 487 465 487 0.98

8 20 0.00023 0.0081 16.7 0.9 2 23 493 515 493 515 0.97

9 20 4.8e-06 0.00017 22.0 0.7 1 23 520 542 520 542 0.98

10 20 0.13 4.6 8.0 4.7 1 23 548 571 548 571 0.97

11 20 0.16 5.6 7.7 1.1 2 23 763 785 762 785 0.94

12 20 1.6 56 4.6 0.5 6 23 794 811 794 811 0.96

13 20 4.7e-07 1.7e-05 25.1 0.5 1 23 817 839 817 839 0.99

14 20 0.00022 0.0078 16.7 0.7 2 23 847 869 846 869 0.95

15 20 0.21 7.4 7.3 3.8 1 23 878 901 878 901 0.94

16 20 0.045 1.6 9.4 0.5 3 23 909 930 907 930 0.96

17 20 0.047 1.7 9.4 0.1 2 23 939 960 938 960 0.96

18 20 0.00019 0.0069 16.9 0.7 2 23 966 988 966 988 0.96

19 20 4.6e-05 0.0016 18.9 0.5 1 23 993 1015 993 1015 0.97

20 20 0.029 1 10.0 2.4 1 23 1021 1044 1021 1044 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.078	2.7	8.7	4.2	2	23	290	312	289	312	0.94
2	20	0.57	20	6.0	0.7	6	23	321	338	321	338	0.97
3	20	0.00055	0.019	15.5	4.0	1	23	344	366	344	366	0.99
4	20	0.00088	0.031	14.8	2.4	1	23	373	396	373	396	0.97
5	20	0.0019	0.067	13.8	2.4	1	23	405	428	405	428	0.95
6	20	0.064	2.3	9.0	0.2	2	23	435	457	434	457	0.95
7	20	0.1	3.6	8.3	1.2	1	23	465	487	465	487	0.98
8	20	0.00023	0.0081	16.7	0.9	2	23	493	515	493	515	0.97
9	20	4.8e-06	0.00017	22.0	0.7	1	23	520	542	520	542	0.98
10	20	0.13	4.6	8.0	4.7	1	23	548	571	548	571	0.97
11	20	0.16	5.6	7.7	1.1	2	23	763	785	762	785	0.94
12	20	1.6	56	4.6	0.5	6	23	794	811	794	811	0.96
13	20	4.7e-07	1.7e-05	25.1	0.5	1	23	817	839	817	839	0.99
14	20	0.00022	0.0078	16.7	0.7	2	23	847	869	846	869	0.95
15	20	0.21	7.4	7.3	3.8	1	23	878	901	878	901	0.94
16	20	0.045	1.6	9.4	0.5	3	23	909	930	907	930	0.96
17	20	0.047	1.7	9.4	0.1	2	23	939	960	938	960	0.96
18	20	0.00019	0.0069	16.9	0.7	2	23	966	988	966	988	0.96
19	20	4.6e-05	0.0016	18.9	0.5	1	23	993	1015	993	1015	0.97
20	20	0.029	1	10.0	2.4	1	23	1021	1044	1021	1044	0.98

Sequence Information

Coding Sequence: ATGTCTATAAATATAAAATGCCGATTATGCTGTACGCCAACCATAAATGGAATTGAAATATTTGGGGAGGAAGGCATGAAATTATCGATTGTAAATATATTACAAAAACACTACTCAATAAGGTTGAATGATAAGGATAGTTCCGGAAAAATTGTGTGTAAAAAATGTTGGCGAACGACAGAGGAATTTCATAGATTACATAACATTGTGATTGAGAATGAAATTGAATATAATGTTATGTTAGGGGAAACAATTAAAAACGAAACTCCACCGGATACGAGCAACGTTGAAATTAAGCCGGAAAATGATAACACCGAACGGACATTTATTATAAGCACTGTCGTTACCACTTCACCAATCATACAAACAATAGATCCAGATCTGAAAGTGTTTGCCGAAGTTATTGAATATAATGATACAGTTAGTGACAATGATGATTTCAATTTGAACACAATTGATAACGTGCAAGTGGAATTAAACGATAGAAAAGGGAAACGAAACACACCCAGACAGATTGCCAAACGTCCTACGAAAGAGAAGACCGTTAGTTCCTATGTACAACAACCTCAAAATAAAGAACGGACGATTGATAAGGGATTGGATTTATGTTGTGAGATTTGTAGTGAGCGAACAACAACGTTTTTAGAATTAAAGCGACATTGCCGTGATAAACATGACCTTATAGATAAAGTTAGTGACAATGATGAATTCAATTTGAACACCATTGATAACATGAAAATGGATAGAAAAACGAAACGAAACACACCCGGACAGATAGCCAAACGTACTGTGAAAGAGAAGACCGTCAGTTCCTATGTACAACAAGCTCAACATCAAGAACGGACGATTGATAAGGAATTGGGTTTATGTTGTGAGATTTGTAGTAAGCGAACCAAAACGTTTTTAGAATTGAAGCGACATTACCGTGATAAACATGAGCTGAACGGTTACCTGAAATGTTGTAATACGAAATTCTTCCGGCGAGGGTTATTGTACAATCATATTCTCAATCATGGTGATCCGAACCGATACAAATGTCAACATTGCAATAAAGTATTAATGGATAAGGAACGATTAAGAAAGCATGTAAGGCGACATGATCCAGCGTTAAAAAAACATGAATGTAGTAAATGTTTTAAGAAATTTACGGCACCGTCTATGTTAAAATATCATTTATTGACGGTTCATAAAACCCAAGATACACCCAAACCATATATCTGTGATATTTGTCATAAAGAATTTATTACAAAAAATTCAGTTTCTCATCATATTTATTCCATTCACATACGGAAATATTCGTTGATGTGTGAAATTTGTGCAAAACCATATGCTAGTCGTAAACTATTAGATTACCATTATAAAAGCTATCATATGAAAATGGAACTACCGAAATTTCAATGTACAATTTGTGGTTCGTGGCTCGCTCATTTAACTACGCTCAAAACACATATGAAATTACATACATCGAAAGAAGAAACGTGTCATTTGTGTGGGAAGATTACGCCGAATAAATTTGCTCTTAAAGATCATATACGTAGTGTCCATAATACAAAACTATTCGTTTGTAATATTTGTGACAAAACTTTTAAGTTAAGTAAATCGTTAAAGGATCATATAATTTCTCATACCGGAAGTAATTTACATAAATGTAAGTATTGTTTCATGGAATTTAATTCCGGGGCTAATATGTATAAGCATAGAAAGAGGATGCATCCAATTGAATGGCAACAGGATCGAGATAAACAAATAAATGGTTTTAAGAGAAATTACATACCAACCAGTATAACAAATAACGATGAACGTTCGCAATTTATATGTAAACACTGTTGGCAAACAACCGAACAATTCCATAAATTATACTGCAATGTACAAAAAATTGAATCCGAACACCTGCAATGTCAAACGGCACAAACCGAACAGCCCAGTTCCATCAAAAGTGATATTAAGGAAGAGCTGGAAACGTTCGAATTAGATTCGAAAATTGGCTTTACTGTTGAACCATTTCTAAGGCAGGAAACGGCAGTTAAAGTAGAAGATTTTTTGGAAGAGACGTTCAAAGAAAACGACGATACAGATGATTATTCGAGATTCGATCATCCGGATGATGAATATGCCGTAGATGGTATGGAGGACATAGAAGATGTACCGTTAATAAGGCGTAAACGCACGAAACGATTGCTAAAGAAAGGAGTACGAACGGTTAAAGAAATCAACCGGAAAGATTTAACATTAACGCAACAACAAGCTTTGCGAGAGGAACAAGAGATCGACAACGTCCTTGGTATGATGTGTGAAATTTGTAGTGAGAAAACAAAGACGTTTCTGGATTTGAAAAAACATTTTCGTGGTCAACATGAAGTGAATGGATATATAAGATGCTGCGAAAAGAAATTCTTTAGGCGTGGAAGATTATACAATCATATACTTGATCATAACGATCCGGATCGTTATAAATGTGAACAATGTGGTAAAGTTTTCGTGGATCCGGAACGATTAAAGAAGCATGTTCGGCGTCATGATCCATCGACAAGAAAATTACAATGCAGTAAATGTCCAAAACGATTTACAGCCCCatctacattagaaacccattttcagagaatccatcaaatcgtcgacataccgaaaacattcttttgtgatatttgcagcaaaagTTTCATATCGAAAATGGCTTGTTCATCACACATTCACACCGTTCACACACAAAAATATTCTCAAATTTGTGATATTTGTGCGAAATTCTATCCGAGCAAGAGATTACTAGACTACCATTACAAAACGACCCACCTAAAGATTGCAATGCCCAAAATTCAATGTACAATCTGCGGATCTTGGCTGGCCAATTTACCCGGACTAAATAAGCATATGCGGACGCACAATGATAAGGAGGAGACATGTAATATATGTGGAAAGAAGGCACCAAATAAACATGCCCTTACAAGTCACATACGTTATGCGCACAACACCGAAACGTATCAATGTAACATTTGTGAGAAACTATTTAAGTCGGCGAAATCATTAAAGgagcatatcggatcccatacaggcacctatctctacaaatgtaaatattgtctgatggaattcaattctggagcgaatatgtataagcatagaaagaaaatgcatccaattgaatGGCAACAAGATCGAGATAATCAAATGAATGGAGGATTTAAAAATGAGGATGGCAAAAAATTGAATTGGCAAATATAA
Protein Sequence: MSINIKCRLCCTPTINGIEIFGEEGMKLSIVNILQKHYSIRLNDKDSSGKIVCKKCWRTTEEFHRLHNIVIENEIEYNVMLGETIKNETPPDTSNVEIKPENDNTERTFIISTVVTTSPIIQTIDPDLKVFAEVIEYNDTVSDNDDFNLNTIDNVQVELNDRKGKRNTPRQIAKRPTKEKTVSSYVQQPQNKERTIDKGLDLCCEICSERTTTFLELKRHCRDKHDLIDKVSDNDEFNLNTIDNMKMDRKTKRNTPGQIAKRTVKEKTVSSYVQQAQHQERTIDKELGLCCEICSKRTKTFLELKRHYRDKHELNGYLKCCNTKFFRRGLLYNHILNHGDPNRYKCQHCNKVLMDKERLRKHVRRHDPALKKHECSKCFKKFTAPSMLKYHLLTVHKTQDTPKPYICDICHKEFITKNSVSHHIYSIHIRKYSLMCEICAKPYASRKLLDYHYKSYHMKMELPKFQCTICGSWLAHLTTLKTHMKLHTSKEETCHLCGKITPNKFALKDHIRSVHNTKLFVCNICDKTFKLSKSLKDHIISHTGSNLHKCKYCFMEFNSGANMYKHRKRMHPIEWQQDRDKQINGFKRNYIPTSITNNDERSQFICKHCWQTTEQFHKLYCNVQKIESEHLQCQTAQTEQPSSIKSDIKEELETFELDSKIGFTVEPFLRQETAVKVEDFLEETFKENDDTDDYSRFDHPDDEYAVDGMEDIEDVPLIRRKRTKRLLKKGVRTVKEINRKDLTLTQQQALREEQEIDNVLGMMCEICSEKTKTFLDLKKHFRGQHEVNGYIRCCEKKFFRRGRLYNHILDHNDPDRYKCEQCGKVFVDPERLKKHVRRHDPSTRKLQCSKCPKRFTAPSTLETHFQRIHQIVDIPKTFFCDICSKSFISKMACSSHIHTVHTQKYSQICDICAKFYPSKRLLDYHYKTTHLKIAMPKIQCTICGSWLANLPGLNKHMRTHNDKEETCNICGKKAPNKHALTSHIRYAHNTETYQCNICEKLFKSAKSLKEHIGSHTGTYLYKCKYCLMEFNSGANMYKHRKKMHPIEWQQDRDNQMNGGFKNEDGKKLNWQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -