Snob016879.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- Znf131
- Assembly
- GCA_027564815.1
- Location
- JANTOP010023991.1:630-2575[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00044 0.016 15.8 4.9 1 23 189 211 189 211 0.99 2 13 6.8e-05 0.0024 18.3 0.2 1 23 217 240 217 240 0.97 3 13 2.4e-05 0.00086 19.7 2.3 1 23 246 268 246 268 0.97 4 13 0.0015 0.052 14.1 3.1 1 23 277 299 277 299 0.98 5 13 0.13 4.5 8.0 3.2 1 23 304 326 304 326 0.90 6 13 3.2e-06 0.00011 22.5 1.1 1 23 332 354 332 354 0.98 7 13 0.0002 0.0072 16.8 3.2 1 23 360 382 360 382 0.98 8 13 0.00021 0.0075 16.8 0.1 1 23 388 410 388 410 0.97 9 13 8.2e-06 0.00029 21.2 0.5 1 23 414 437 414 437 0.98 10 13 0.029 1 10.0 0.5 1 23 454 476 454 476 0.95 11 13 0.018 0.64 10.7 1.9 1 23 482 504 482 504 0.99 12 13 0.00028 0.0097 16.4 2.9 1 23 510 534 510 534 0.91 13 13 0.0082 0.29 11.8 2.6 3 23 540 561 540 561 0.98
Sequence Information
- Coding Sequence
- ATGGACAACTACTTTAAAAATCCAGATAAAACATGTCGAATTTGCTATTCGATGAACAACAATTCCGAACCTTTATTCCAAAACAGTGATTTACTCCAAAAAGTATTAGAATTCCTACAATTTGAGCTTACCGATAAGTACCAACTCCCGAAGGCGATATGTAAATCGTGTAAAACGAAAACGATCATTTACGTTGATTTTCGGCGGCAATGTAAGAAAAATAATGACAAACTTCTGGAAGAATACGAGAAACTAGACCACACGGCTCCAGGTCCCCCATCCCCCGCTCTAGTTAAAATTGAGGAGCCGGAAATCATTAAAAATGAACGCCCGGATACGGATCAAGTCCCAGATAAATTCGAAGTGACATATTTACTAGAGGCAGACGAATCAGAGAGGACGGAATTTGAAAAATATAAATCCGGAACGGATAGTGAAAATAATCAACTAGATGATAACTCATCATCTGATTCGACTGAGAAATCATCTAGAAGGCGTTCCCGAAGGGGACAGACAACTATAAAGCGTCGCCGTCGTAAGAGACGGTTGGGTTTCAAGGAAATATTCAAatgtaaatattgtaataaagtattcaaggaaatcaatacgtacaatcaccatgttaacacgcacaccggtgaaaatccatatcaatgcacggattgtgATGCAGCGTATCCAAATCCCACCTCCTTGAAATACCACATCTCTCGCCAGCACGaagagaagaaactattcaaatgtgatatttgccagaaacatttctcatcacagtcggccgtaaagactcatctactgttgcacaccgaaggtcaggaggatcgacaatttgaatgtcaaacatgcgggaaaatgtttggtgccgaacgtcactacaagtaccatttgaaaacgcacgccaaaaaaccgtacgaatgtgattattgcggtaaaggttttctaacccgaaccctattgaaatgtcattttgatacgcataccggcgagaagttacatcaatgcgaatggtgtccgaaaacatttatatcggccgctcacctatccgcccatcgacgtatccatacgaaggagaaaccgtatccatgtaaattgtgtggcttacgattcacttactcgaaagcattgaaatatcatttgaaacatcacgatgccccgaaaccatataaatgtgatatgtgtccggaagcatttatttctgccgctagtttacatagtcatggacgagcacatatgggggaatataaatgtACGGTTTGCGATACGGAATTTAATAAGAAAGTGGAACTGATCAAACATGAACGAACGGCTCACCGGGAAATTAAGATCCAAGAACGGAAATTAAAGGTGATCGAGAAACCATTTAAATGTGAATTGTGTCCACAATCATTTCTGAAGGAGGCCAGTTTAATTAAACACGGGAAATTTCATACAAAAGAGAATCCATATCAATGTCTTTTATGTAGTTTACGGTTTACATCCTTCACCGCAATTAGATATCATTTGAAGACGCATAGTAATGATAAGGAGTACAAATGTGATCAATGTGATAAGGCGTACAAATCGTTATGCAATTTAGATCGACATCGTAAGATCAAAGGACACATAAAGATTCATGGTTGTAAATTGTGCAACATGAAGTACGAATCGAGCGGTGAATTATTGAAACATCACCGGAAGGAGCATATTAAGCGACGGGAAAAGAAAACGAATCGTGTTTATAAAACTAAAAAGAGATTACAAGCTATGGCTTTGCTTAATTCTACTTTAGGTATTTCAATGGAGATGAAATGA
- Protein Sequence
- MDNYFKNPDKTCRICYSMNNNSEPLFQNSDLLQKVLEFLQFELTDKYQLPKAICKSCKTKTIIYVDFRRQCKKNNDKLLEEYEKLDHTAPGPPSPALVKIEEPEIIKNERPDTDQVPDKFEVTYLLEADESERTEFEKYKSGTDSENNQLDDNSSSDSTEKSSRRRSRRGQTTIKRRRRKRRLGFKEIFKCKYCNKVFKEINTYNHHVNTHTGENPYQCTDCDAAYPNPTSLKYHISRQHEEKKLFKCDICQKHFSSQSAVKTHLLLHTEGQEDRQFECQTCGKMFGAERHYKYHLKTHAKKPYECDYCGKGFLTRTLLKCHFDTHTGEKLHQCEWCPKTFISAAHLSAHRRIHTKEKPYPCKLCGLRFTYSKALKYHLKHHDAPKPYKCDMCPEAFISAASLHSHGRAHMGEYKCTVCDTEFNKKVELIKHERTAHREIKIQERKLKVIEKPFKCELCPQSFLKEASLIKHGKFHTKENPYQCLLCSLRFTSFTAIRYHLKTHSNDKEYKCDQCDKAYKSLCNLDRHRKIKGHIKIHGCKLCNMKYESSGELLKHHRKEHIKRREKKTNRVYKTKKRLQAMALLNSTLGISMEMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -