Snob008645.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010073372.1:742-8077[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.023 0.81 10.4 2.9 2 23 2 23 1 23 0.97 2 18 0.006 0.21 12.2 7.4 1 23 29 51 29 51 0.97 3 18 0.0017 0.059 13.9 0.5 1 23 57 79 57 79 0.95 4 18 4.6e-05 0.0016 18.9 0.6 1 23 116 138 116 138 0.96 5 18 0.0029 0.1 13.2 4.8 1 23 144 167 144 167 0.96 6 18 0.00016 0.0056 17.2 1.8 1 23 173 195 173 195 0.99 7 18 0.0026 0.094 13.3 1.1 1 23 201 223 201 223 0.99 8 18 0.0003 0.01 16.3 1.2 2 23 230 251 229 251 0.96 9 18 0.00077 0.027 15.0 1.4 2 23 581 602 581 602 0.96 10 18 0.049 1.7 9.3 3.4 1 23 607 630 607 630 0.98 11 18 0.017 0.61 10.8 0.7 2 23 636 657 635 657 0.96 12 18 0.0075 0.26 11.9 5.7 1 23 663 685 663 685 0.96 13 18 0.083 2.9 8.6 2.2 1 23 691 713 691 713 0.93 14 18 6.7e-05 0.0024 18.3 0.6 1 23 752 774 752 774 0.96 15 18 0.005 0.18 12.5 4.3 1 23 780 803 780 803 0.96 16 18 0.047 1.6 9.4 4.1 1 23 809 831 809 831 0.98 17 18 0.00042 0.015 15.8 1.8 1 23 837 859 837 859 0.98 18 18 0.0011 0.039 14.5 1.2 2 23 866 887 865 887 0.96
Sequence Information
- Coding Sequence
- ATGACCTGTCCAAAGTGTAATGCAACATTTACAAATCGAGATATCTATTGCTACCATTTGAAAACTCACGAACCAAATAAGAAATATAAATGCCAATATTGTGAGAAATCCTTCTTGCAGAAACATCACTTAACGAATCATGAGAATTATCATACCGGCGCTAAGCCATACCTTTGTTTTGTATGCGCCAAAAGTTTTCGGGACGAGCAACAATATAATTGGCATATAATTAAGCATACCGGAAAAGTTGTACGTAAGGAACCTGCACGGAACCGATCGAGACAGGCAGTGAAACATGTGAAAAGTAAATATCTATATGGAAAGCCAATTAATTCTTTGCCTACATACGATTGTCAGAAATGTTCCAAATCATTTCGTTTGCCATCATCGCTTGAGAATCATCTAGTTATGCATGAAGAGGACCGTAATCATAAATGTAACATATGTAGTTTAAGATACAAGCGAATCACCCATTTACAGTCACACATTCGATTCGTTCATTTGAAGGAGAAACCGTTCAAATGTACTGTTTGTGATCGACGGTTCTCACTCCATAGTGTACTTGCAGAACATATGTCAACTCATTCGGATGCGAGACCATTCAAATGTGATCAATGTCCGGCAACATATCGTACAATACGAATATTACGGAAACATTTGCGTACGCATACCGGTGAGACATTGCTTCAATGTCTATATTGTAGGAAATCATTTGCTACACATAGCGCGTTGATTGTACATAATTTGACGCATGCGGATTCGAAGGCGGTGAAACTATTAAGAGAAGTTGAATTAAGGGCGGACGTAGATATGGGAACCAGCAATGAAAAATCTCCATCACGTATGGGTTTAAATAGGCTGTTGGCCTCGTCGGCATCATCTGGATTGTCTCGATCTCCATATGTTACACCAAGTGTTAAATCAGCTAACTTGGGTAATGTAGACAGGGGATCTGTTAACACCATACAACTATCAGCATGTGTTATCCCTGCTATCTCGACTATACTCGACAATTATGACTCGGAGGAACAGAAGTACACGACAAAAATCGAAATCTTTGACGATGTAGATATCAAAACGGAAATCGAGTGTTCACCATCGCATGAAGGTGCTGAAGATCCACTACAGTACAATGAGGAGAAGATATTCGCGACACCGATTGATATAATAGATGAGAAATTAGTTGAACTTCCGGATAGCGGTATAGATAACCAATATCCATCAATTGATTACCATGATCCTACGTGGAGAATTCTTACGGATTTAGAATCATGTTGTAGATTGTGTTTAGTAGCATTACCAAATTCTGATATCCAGTTTCTGTCTGAATTAATGTACGATGAAATATCGATCAATTTAAAGGAACTAAATATATCGATTGACGATGGATTACCGCAACGAATCTGTGGAAATTGTTGTCAAGTTTTCGAAGCAATGAAAACTTTTATTCAACAAGCAAGACGATCCCAGGAGTTTCTACGGAAACATTTAAGTACGAGAATTGAAACACAAATCGATACGGTAGATAATAATGCAAAGGATCTATCAAATGAATTAAAGGATATATTTGATAATGAAACGAGTTCTGTAGCGAATAAGACTGAATCAAACCCATCCAATACCCAAGCCTATCTAGAACTAAGTAGACATATTGAGAATGGACTAGAATCGGTGCATGTTCCGGATACGGAGACAGTTATCAAATCTGAGACTAAAATAACTGTTAATAACCCAGATCGATACTGTGAAATATGTGATAAAACATTTTCTAGCAAAGCTTGTAGAATTTATCACATGGAAATACATGCGAACAATACATACGAATGTTACATTTGCGGATCCAATCATAAAACAAGATTGAATCTAAAGACACATATGCGACGAAATCATTCCACAAAAATAATGACCTGTCCAAAGTGTAATGCAACATTTACAAATCAAGTTATCTACAGCTACCATTTGAAAACTCACAATCCAAATAAGAAATATAAATGTCAATATTGTGAGAAATCCTTCTTGCAGAAACATCACTTAAGTAATCATGAGAATGCTCATACCGGTGTTAAGCCATACCTTTGTTTTGTATGCGGCAAAAGTTTTCGGGGCGAGCAACAATATAATTGCCATATAATTAAGCATACCGGAAAAATGTTACGTAAGGAAACTGTGCGTAACCGATCGACACTACAACAGACAGTGAAAGATGTGAAAGGCGAATCTCTATATGGAAGGTCAATTAATTCTTTGCCTACATACGATTGTCAGAAATGTTCCAAATCATTTCGTTTACCGTCAACGCTCGAGAATCATCTAGTTATGCATGAAGAGGAACGTGATCATAAATGTACAATGTGTAGTTTAAGATATAAGCGAATCGCCCATTTACAGTCACACATTCGATTCGTTCATTTGAAGGAGAAACCGTTCAAATGTACTCTTTGTGATCGACAATTTGCACGTCATTGTATACTTGCCGAACATATGACAACTCATTCGGATGCGAGACCATTCAAATGTGACCTATGTCCAGCAACATATCGTACAAAACGAACGTTACGTACACATTTTCGTGCGCATACCGGTGAGACATCGATTCAATGTCTATATTGTAGGAAATCATTTGCTACACATAAAGCGTTGATTGTACATAATTTGACACATGCGGATTCGAAGGTTGTAACTGACAATACAGATAAATAA
- Protein Sequence
- MTCPKCNATFTNRDIYCYHLKTHEPNKKYKCQYCEKSFLQKHHLTNHENYHTGAKPYLCFVCAKSFRDEQQYNWHIIKHTGKVVRKEPARNRSRQAVKHVKSKYLYGKPINSLPTYDCQKCSKSFRLPSSLENHLVMHEEDRNHKCNICSLRYKRITHLQSHIRFVHLKEKPFKCTVCDRRFSLHSVLAEHMSTHSDARPFKCDQCPATYRTIRILRKHLRTHTGETLLQCLYCRKSFATHSALIVHNLTHADSKAVKLLREVELRADVDMGTSNEKSPSRMGLNRLLASSASSGLSRSPYVTPSVKSANLGNVDRGSVNTIQLSACVIPAISTILDNYDSEEQKYTTKIEIFDDVDIKTEIECSPSHEGAEDPLQYNEEKIFATPIDIIDEKLVELPDSGIDNQYPSIDYHDPTWRILTDLESCCRLCLVALPNSDIQFLSELMYDEISINLKELNISIDDGLPQRICGNCCQVFEAMKTFIQQARRSQEFLRKHLSTRIETQIDTVDNNAKDLSNELKDIFDNETSSVANKTESNPSNTQAYLELSRHIENGLESVHVPDTETVIKSETKITVNNPDRYCEICDKTFSSKACRIYHMEIHANNTYECYICGSNHKTRLNLKTHMRRNHSTKIMTCPKCNATFTNQVIYSYHLKTHNPNKKYKCQYCEKSFLQKHHLSNHENAHTGVKPYLCFVCGKSFRGEQQYNCHIIKHTGKMLRKETVRNRSTLQQTVKDVKGESLYGRSINSLPTYDCQKCSKSFRLPSTLENHLVMHEEERDHKCTMCSLRYKRIAHLQSHIRFVHLKEKPFKCTLCDRQFARHCILAEHMTTHSDARPFKCDLCPATYRTKRTLRTHFRAHTGETSIQCLYCRKSFATHKALIVHNLTHADSKVVTDNTDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -