Snob015567.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- znf711
- Assembly
- GCA_027564815.1
- Location
- JANTOP010010994.1:3411-9316[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0029 0.1 13.2 1.1 1 23 194 216 194 216 0.97 2 14 2.4e-05 0.00083 19.8 2.4 3 23 224 245 223 245 0.96 3 14 0.049 1.7 9.3 0.2 2 23 252 274 251 274 0.93 4 14 9.3e-07 3.3e-05 24.2 0.7 1 23 310 332 310 332 0.97 5 14 3.5e-05 0.0012 19.2 0.7 2 23 339 360 339 360 0.97 6 14 0.00022 0.0079 16.7 0.2 1 23 366 389 366 389 0.97 7 14 0.0057 0.2 12.3 2.5 1 23 396 419 396 419 0.96 8 14 0.0012 0.044 14.4 3.5 1 23 578 600 578 600 0.99 9 14 8.3e-05 0.0029 18.0 2.8 3 23 602 622 601 622 0.97 10 14 0.00052 0.018 15.6 1.5 1 23 627 649 627 649 0.96 11 14 0.00017 0.0059 17.1 0.4 2 23 656 677 655 677 0.97 12 14 0.00015 0.0053 17.2 0.3 1 23 684 706 684 706 0.98 13 14 0.69 24 5.7 5.3 1 23 712 735 712 735 0.97 14 14 0.00039 0.014 15.9 1.3 1 23 741 763 741 763 0.98
Sequence Information
- Coding Sequence
- ATGTATAAAAATTATTGCCGAATTTGTGGTCTAAAACGATCTCAAGATAATGTGATATTTTTCGTATCATTATTTACTGAGAATTGCGGAGAAGCAGAATTAACAAAACATGCTACAATGTTCGGTAAATGTTTATTTGAATTGGATCCATCCGATGAGGGTCCAAGATATCTTTGTGGCGCATGTAAGATCAAGTTAAGTCAATTTCATGAATTTCGTAAGAAAGCCCTCGAAACGAATGAACTGTTTTTAAGAAAAATTGGAGTAACAGTAAATTTAGACACACCAATTAATCGAATAGCTCCTAAAGAATCTCTCCCCGACGTAAAATTTGAAACGAAGAAGGATGAAGAACTATTCCGGATCAATAAAGAAAATGACTGGTATGATAATGTGAATGATGAAAGTGTACATTCATTTGAAAATCATCGTAATGAGACTGACGATATTGGACTAAACATAAATGAAGAACCGATAAACGACCATCAATTACCCCCTATTCTGGAAACATCTAACACACCTTCAACTAGTGATGTAGGAGTATTGCAAAATTCTCGTCATATATCAAATAAACAAAGATTCAGCTGTAAACATTGTCCGATGGAATTTACTTTATCCTCAGTTTTAAGGGTTCATGAATTAAGCCATTCAAGTGTAATAGACAGGCCGTGTCCACATTGTAATTTAACTTTCAAATCCGAACAAAATCTTAAAAATCACATAAACAGAAAACATACGAACAAATCGGAATTAATGTGCGACATATGTGGAAATTGGTATAGCCAGAGAACGTCATTAATACGACATTTCCGGGCAATACATTTCTATGACATCGAACGTAAATATAATAGGTATTTGGTAAAAAGGCGACAACCATTAAATTACAAGGAATCTGATTGCGTACAAAAGAAAACCAAACCCAGACCATATGTGTGTAAATTTTGTGGTAAAACATTCCCAAACCCATCACAATTATTGAAACATGAATCAAGACATACGGATTTGCGATTAGCTTCGTGTAATTACTGTGGCATGAGATTTAAGGTTGAGATAGATTTGAAACAACATATAAGAAGGCATGAGAATAAAAGACGATTTATGTGCGATATTTGTGGGAAGGCTTATAAAGAAAAAATTGTATTAAAAACTCACATAGAGACCAATCATACGAATACCGTTGAAATACATGAATGTCAATATTGCTCGCAAAGACTCAAAACTAAAGGTAGTCTAAATAGCCATGTTCTTAGAAATCATTTAAATGCTGGAAAATATGTCTGTCTCGTATGCGATACCGGATTTGGATGGAGTACTGATTTGAAAGTATATCTCCAGGAAGATTATCCGGAATATCTTTGCACAGTATGCCAATTGAAGCTTTTGGAATTTTATGAATTTCGCCAATTAGCGCTTCGAACGCACGAAGAATTTTCGATACGAATTAAAGATTTAAAATTTCGAACCGATCACGAGACAAGTGAACAGCTTTGTAAAATTGAAAGTTCCATATCTAATGATGCTTTAGCTAGCTTAACATACTTTGAAACAAATTTTAATGAATCTGATTTAAGTACATGTTTGAATGAAAAATTAAAGCGTGAAGATAATGGTACTTCCAACCAGCAAGATTTAGATAGAAAATATGATAAAATTATTGACATGAATATTAAAAATGAAGAGAATTTATGTGACAACAAAACATCAATAAGAAGTAAACGTGGGAAAGTCCTTTACCGTTGTAATTTATGTCGTTTAGAATTTTCGAATAAGAAGTTATTCAAAGAACACAAAAATACCCACATATGTAATTTGTGTCATAAAACATTTACTCAACCGGAATTCCTAAGAAGTCATATGTTTAGTCATGATAAACCAGATTTTATGTGTGGTACCTGTGGTAAACAATTTAAAAGATTGCAATTTTTGCGGGCCCATGAAACTAgacacacagctgaacgaaaccttccatgtaatttatgcgataaactttttaaatttccatgggacgttaggaaacatttaaggacccatacggacgagacaaaaatatttgaatgcgatatttgcgGTTTTACATGCCGGGGTAAAGCTCAATTAGCACTTCACATCGAAACACATTCAAAAGTTAATCTCTACAAGTGTCATATCTGTTCCGTGGAGAAGAGAACAAAACATAGTTTGTCATCTCATTTGAATAGTAGACATTATAAAGCGGGAAAATATATCTGTTTATTTTGTAAAGCCGCATATGGTACCAAATCACATTTGGTGAGACATGTACGAACTCATGTTAATAATGGCGCTATCAATGAAGATGACATGGAACGATATATAAAGTTGGATTTTATAAGACAGAGAAATTAA
- Protein Sequence
- MYKNYCRICGLKRSQDNVIFFVSLFTENCGEAELTKHATMFGKCLFELDPSDEGPRYLCGACKIKLSQFHEFRKKALETNELFLRKIGVTVNLDTPINRIAPKESLPDVKFETKKDEELFRINKENDWYDNVNDESVHSFENHRNETDDIGLNINEEPINDHQLPPILETSNTPSTSDVGVLQNSRHISNKQRFSCKHCPMEFTLSSVLRVHELSHSSVIDRPCPHCNLTFKSEQNLKNHINRKHTNKSELMCDICGNWYSQRTSLIRHFRAIHFYDIERKYNRYLVKRRQPLNYKESDCVQKKTKPRPYVCKFCGKTFPNPSQLLKHESRHTDLRLASCNYCGMRFKVEIDLKQHIRRHENKRRFMCDICGKAYKEKIVLKTHIETNHTNTVEIHECQYCSQRLKTKGSLNSHVLRNHLNAGKYVCLVCDTGFGWSTDLKVYLQEDYPEYLCTVCQLKLLEFYEFRQLALRTHEEFSIRIKDLKFRTDHETSEQLCKIESSISNDALASLTYFETNFNESDLSTCLNEKLKREDNGTSNQQDLDRKYDKIIDMNIKNEENLCDNKTSIRSKRGKVLYRCNLCRLEFSNKKLFKEHKNTHICNLCHKTFTQPEFLRSHMFSHDKPDFMCGTCGKQFKRLQFLRAHETRHTAERNLPCNLCDKLFKFPWDVRKHLRTHTDETKIFECDICGFTCRGKAQLALHIETHSKVNLYKCHICSVEKRTKHSLSSHLNSRHYKAGKYICLFCKAAYGTKSHLVRHVRTHVNNGAINEDDMERYIKLDFIRQRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -