Snob009798.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- SALL1
- Assembly
- GCA_027564815.1
- Location
- JANTOP010051299.1:1503-9633[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0031 0.11 13.1 0.9 1 23 65 87 65 87 0.92 2 21 0.054 1.9 9.2 1.5 2 23 128 150 127 150 0.94 3 21 0.079 2.8 8.7 0.7 2 23 157 178 156 178 0.95 4 21 1.5e-06 5.3e-05 23.5 3.9 1 23 355 377 355 377 0.99 5 21 3.3e-05 0.0012 19.3 3.1 1 23 383 405 383 405 0.98 6 21 0.48 17 6.2 0.5 1 23 414 436 414 436 0.92 7 21 0.65 23 5.8 1.4 1 23 442 465 442 465 0.94 8 21 0.32 11 6.8 0.6 2 23 541 562 541 562 0.97 9 21 0.048 1.7 9.4 0.3 6 23 573 590 573 590 0.98 10 21 0.083 2.9 8.6 0.0 1 23 601 623 601 623 0.97 11 21 0.29 10 6.9 3.1 2 23 659 680 658 680 0.94 12 21 1e-06 3.6e-05 24.1 1.2 2 23 687 709 686 709 0.97 13 21 0.00029 0.01 16.4 0.7 1 23 847 869 847 869 0.97 14 21 3.6e-06 0.00013 22.3 3.7 1 23 875 897 875 897 0.98 15 21 0.037 1.3 9.7 2.4 1 23 906 928 906 928 0.98 16 21 0.003 0.11 13.1 3.1 1 23 970 992 970 992 0.94 17 21 0.00025 0.0089 16.5 4.7 1 23 998 1020 998 1020 0.96 18 21 0.00068 0.024 15.2 3.3 2 23 1030 1051 1029 1051 0.95 19 21 1.5 53 4.7 2.7 2 23 1058 1080 1057 1080 0.95 20 21 0.00039 0.014 15.9 0.5 3 23 1094 1114 1093 1114 0.98 21 21 0.032 1.1 9.9 2.6 1 23 1120 1143 1120 1143 0.97
Sequence Information
- Coding Sequence
- ATGGACACAACCAACTGGAATGGAGATGTCCAATTTAACAATCAAACAAATCAATTAATCAATGATCCTGTAAAGAAGGAATCCGGAGATTTGTCTATTACTTCAAGATTAATATGTAGATTTTGTTGGATGATCTGGTCGGACTTTGAAACATGGCAGAAACATGAAGATACACATACCGGGAAACGGCCATTTCTTTGTACCATATGTGGAATGACGTTTCGGGAGGAGAGTACATTTAAAAGTCATGCAACATACCATTCTGTATCTACCAAACCGGGTCAAGAAACATATCCATGTGGAGTGTGCGGTGATAATTTATATTCGGATGAAGCGCTTGACGATCATATTTTAGATTTTCATATCGATGAATGGCCGCTTTCATGTGATTTTTGTACGACCCGTTATACAACCCGAACTTACTTAGCATATCATCAAGATTCATTTCATAATAATCGGAAGAATATCGTTTGTAGGATTTGTGGTGAGAAATTTGAAACCAAACCACTTCACAAGGTACATATTTCTAAACATACTGACGATAAATCGAGTATATCTACCCGTGAGAAGAATGAATCCACTCAAAAATCGATCCAATTCCAATCACATACGGTTGAGAAAGAACCGAATCGAGATTTTCCAACACCCCTTGTTGAAGTGAAAATAGAATTAACTGATATTGAATTAGACAATCCAATTAAACAGATTGAAATGACTGATGTTTGGATTAAAGACGAATTCGGTACAAATGACGAATTGATTAATCCTAGCATTGAATTTATTAAAACTGAAGTTATCGAAGAGAATAGTGTTTTTATAAAGGAAGAACTAGAAATGACTGATCAAACAGAACAAAATTTAACAGAGAATGGTAACGCAACAATTGCAAAATCCGAATTAGTAGATGGTTGCGAATTGGTTAGTATGGATGTTGTAGCAATAAGCAATGATGATAGCAACTCGTCTTTTAATAATTGTACGGAGGAGTTTAACGGACAGGCCGATTATCAGACTGATAATACTACTCCGCTGTTAGAAGCGACCGACAAAACACAACAGAGATATAAATGTAAATATTGCCAGAAAACATTTTCAAGACGTACTACTTTGCAGGATCATCAAAATGTACATTCAGGCGAGATGCCGTATCATTGTAATGATTGCGGGAAGGCATTCGCGTATGGCTCTCACTATAGAAGTCATTTGAGAGTTCATGCCTATAAAGGAATAATTAAATCATATGAATGTGATATATGTGGTAGAAAACTACATGCAAGGAATCGTATAGTCGAACATATGCGCTTACATACCAAGGAACGTCCGTACGTATGTGATATGTGTGATAGCCGATTCATTTCAGCTTGGCGGTTAACTTGTCATCAAAAATACATCCATAAGATCCTGATCTCCGTCCGTGCTGAGAACAGCGGGTTCATCTTTGCATCTGAAGGTTGTGCACCAAAGAAGATGGATTTGAGTGATCCAAGCAAATCTAATGAAGAAATTTCAACAAACGGTACTATTGTTGATCCAATCAACCAATCTATTAGCAATTCAGAATTAAACGCGGATGCTCTGACAGAAGAATCGAAGGGTAACGAATTGGTAACTAGAATCGAGAAATGTAAATATTGTTACAAAGAATTATCTGAACTTGAAACATGGCAGGACCATGAACAGACACATACCGGCGATAGGCCATATCTTTGTATCCCATGTGGAATGACCTTTCGGCAGGAGAGTACGTTGAGAGGTCATACAAATTATCATAATGCAACCAGTGAACCGGAAAAAGGAACGTATCCATGTGGGGTTTGTGGTGAAAATTTATATTCAGTGAATGAGTTACGTGAACATACAAGTGTACATGCTGTTGAATGGCCGGTTGAATGTACATTATGTATGGGCCGATTTACAAGCACAATTTATTTAACATACCATCGAAATGCATTTCATTCCAATCGGAGAAATATCGTCTGTACGACATGTAGTAAGAAATTTGGTAAGCGGAAACATCAGCTGCAACATATGGTACAACATAGTGACGAAAAACCATCGAAATGTACCAAATGTGACAAAGCGTATACCAGAAAGTCTAGTTTAAATGCACATATGCTTAAAGTGCATGCGAGAAATAGAATCATTAGCGACCAGGATGATTCTTTGGATATCCTTCTAAATCGTGATATTCCAATAACGGAGGATGGAAAAGACAATCCAATTGTACGTATTGAAATGACGGATGTTTGGATTAAAGAGGAATTCGAACCGATTGACCTATTAACCGATCAAACCTGTGATAATATGGATGATTTCGAAAATGAAATAACAGAAACGAAAGATTCTATAAAGAATGATTTCGAGCAATCTGAAGTAAATACTAACAATTCGAAATACGAAATGATAGAACAGTTGTGTGATGTAAAAATTAGTGATGAGGACGAACGGAAATCACTTATCGGTGTACAGGTAGAATTGAGTGAACGATTTGATGAGGAGTCATCAGAGACAGAAACAACCGGCCCGGCCCCAACACGATATGAATGTAACTATTGTGAGAAAACGTTTTCGAGGTATGGTACGGCAAGGGAGCATGAAAATATCCATACGGGTGAGAGTCCACATACTTGTGAAGATTGTGGATTAAGCTTTAGATATAAGACTACGTTAAGAAAACATTTACGAATGCACGCTAGTGGAGGGATAAGAAAATCATATCAATGCGATATATGTGGCAAAATTATGTATTCAAAGAAATGTATATCCCAGCATATGAAGTTACATATGGATGAACAACCTGACGCAATTGATCTCTGTTTGAAAAACCATCGAAAATCCTCTAAAAAGACTAGGAAACTCCCGACACGGAATACAAGACCAAATGACCTCGATGAACCCCGACCGATATATAAATGTAAATATTGTGAGAAAATTTTTACGAGATTTGGGTCAATGAGGGATCATGAACATGCACACAGGGGTGAGAGACCATATCTCTGTAATTATTGCGGAAGGAGTTTTACATACGACACTGATTTCAAGAAACATTTGCGACACCATGCGAATGGATGGGTAAAGAAATCATGTCAATGTGATATATGTGGTAAAATTGTTAATTCAAGAAAAAGTTTAACGCAACATATGCATTTACATTCCAAACAACATCCGTGCGTATGTAATTTGTGCAACAGTCGGTTCATTTCCGTAATTAAATTGATCTACCATAGAAAACGGTTTCATGGTGTAAATGAGGGAAAGGTGTACAATACAAATGCTTTCTGTTCGGTGTGCGGAAAAAAATTTGGCTCAACAAATGCAGTGAATGCACACATGAGAAAACACATTGAAAATCGAGTTTTTACATGTTCACACTGTGGTGATACATTTAAGGAAGTTAGGGAGTTACGACTTCACAAAAATAAACTTCATTTGGATAACAAATAA
- Protein Sequence
- MDTTNWNGDVQFNNQTNQLINDPVKKESGDLSITSRLICRFCWMIWSDFETWQKHEDTHTGKRPFLCTICGMTFREESTFKSHATYHSVSTKPGQETYPCGVCGDNLYSDEALDDHILDFHIDEWPLSCDFCTTRYTTRTYLAYHQDSFHNNRKNIVCRICGEKFETKPLHKVHISKHTDDKSSISTREKNESTQKSIQFQSHTVEKEPNRDFPTPLVEVKIELTDIELDNPIKQIEMTDVWIKDEFGTNDELINPSIEFIKTEVIEENSVFIKEELEMTDQTEQNLTENGNATIAKSELVDGCELVSMDVVAISNDDSNSSFNNCTEEFNGQADYQTDNTTPLLEATDKTQQRYKCKYCQKTFSRRTTLQDHQNVHSGEMPYHCNDCGKAFAYGSHYRSHLRVHAYKGIIKSYECDICGRKLHARNRIVEHMRLHTKERPYVCDMCDSRFISAWRLTCHQKYIHKILISVRAENSGFIFASEGCAPKKMDLSDPSKSNEEISTNGTIVDPINQSISNSELNADALTEESKGNELVTRIEKCKYCYKELSELETWQDHEQTHTGDRPYLCIPCGMTFRQESTLRGHTNYHNATSEPEKGTYPCGVCGENLYSVNELREHTSVHAVEWPVECTLCMGRFTSTIYLTYHRNAFHSNRRNIVCTTCSKKFGKRKHQLQHMVQHSDEKPSKCTKCDKAYTRKSSLNAHMLKVHARNRIISDQDDSLDILLNRDIPITEDGKDNPIVRIEMTDVWIKEEFEPIDLLTDQTCDNMDDFENEITETKDSIKNDFEQSEVNTNNSKYEMIEQLCDVKISDEDERKSLIGVQVELSERFDEESSETETTGPAPTRYECNYCEKTFSRYGTAREHENIHTGESPHTCEDCGLSFRYKTTLRKHLRMHASGGIRKSYQCDICGKIMYSKKCISQHMKLHMDEQPDAIDLCLKNHRKSSKKTRKLPTRNTRPNDLDEPRPIYKCKYCEKIFTRFGSMRDHEHAHRGERPYLCNYCGRSFTYDTDFKKHLRHHANGWVKKSCQCDICGKIVNSRKSLTQHMHLHSKQHPCVCNLCNSRFISVIKLIYHRKRFHGVNEGKVYNTNAFCSVCGKKFGSTNAVNAHMRKHIENRVFTCSHCGDTFKEVRELRLHKNKLHLDNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -