Snob003624.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010028859.1:856-6753[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.076 2.7 8.7 0.2 1 21 254 274 254 275 0.93 2 13 0.086 3.1 8.6 1.6 2 23 359 380 359 380 0.96 3 13 0.0065 0.23 12.1 2.9 1 23 385 408 385 408 0.95 4 13 0.00037 0.013 16.0 1.4 3 23 414 435 412 435 0.95 5 13 8.8e-06 0.00031 21.1 7.1 1 23 441 463 441 463 0.99 6 13 0.0067 0.24 12.0 0.7 2 21 470 489 469 490 0.91 7 13 3.8e-05 0.0014 19.1 0.3 2 23 502 523 501 523 0.97 8 13 4.9e-06 0.00017 21.9 0.8 1 23 529 551 529 551 0.98 9 13 0.00017 0.0059 17.1 4.4 1 20 568 587 568 590 0.96 10 13 6.3e-05 0.0022 18.4 0.7 1 23 598 621 598 621 0.91 11 13 0.009 0.32 11.7 0.2 3 23 629 650 627 650 0.92 12 13 2.4e-07 8.6e-06 26.0 0.8 1 23 656 678 656 678 0.99 13 13 0.00015 0.0053 17.2 0.2 1 22 684 705 684 705 0.97
Sequence Information
- Coding Sequence
- ATGAAGAATCCGGACATTCTTAAAATAGATGAAACGAAAGTGAAGAGACTTAAAAATCCGAATCGTATCGATGAAAAAACGATTAAAATGAAAGTCACGACTATGATATCAAAACGAATTACGGAATTGGATAAGCTTCTGAAGAACATTCTTAGGGACAATGTTTCTATTGAAGAACAACAGCTTTTTTTACAGTATAATGAAAGACCGGACTTCCCATCACTACAATGGTTTGAACCAACATCAAATTCGGCTATCGATTTAGAGCAGACTTGCCGCGTTTGTGTTCGTGTGATGGCGAAACTTGAGAAACGGGTCAGTTTGTTTCCTGACCCGACCGGAAATAATTTCAAAACCGATTTTAGAGAATTGAATAGCATGAATTTGAAGATTTATCAAGATGATGGACTTCCACAGAATATTTGTGCACCTTGTGCCACCCGATTGGAGCAATTGAAGGAATTTTGTTTACAGGTTGTCCGAGCTCAATACATTTTACAGGCTTATTTCGACCGAATCGATAAGACAAATGATTTGGATGATACGTTCGATCCAAATCAGCAAATGGAAGATGTTGGTATTGAATATTTAAAAGCGGAACCACCAATCGATATTTTCGATTTTTCTGGGCTGGATCCTCCGCCAGAAAATACTGAAATCAATAAATTTTTATATCAACGTGATAAAGATATTGAATCGAATGGTAAAATGATTGATATCAGTGAATTCGAAGTTGTTAACATCGCTAATGATTTGAAATTTAAATGTAACGATTGTGAAGTAACGTTTCAGGAATACGTGGAGCTATACGACCATAGACAAATATGTAAGGAACCAAAATCGGAACCGGCAACCATAACCGCTCCAGTCGATCTTGTTGAGGAACAGCGAGATGATGATGATTTCTGGTGGAATGAAATTAATTCGATTCAGTCGACTGAATCAATTGCTTATGCACCAAAAAAGAAAGCAGTGAAGCGAGTTAAACTAAAAGAAAAAAAACTAAACGAGAAAACTAAAACTAAAACGAGAAAAATTGAAAATGATCCGATGGGTAACTATAGATTCTCAAGATATTGTGGAATTTGCAGGACGACATTTCATTCATTTGCCAATCGAAATGAACACATGTTAATTCATAATAAAGGTAATCACCAATGTAAAAAATGTGACTGTAATTTCGAAGTAAAAATCGATTTAACCGCGCATTATAACGAAGTACATCCAAGTCCGATAATTTGTCTGCAGTGCAATCGAATTTTCAAAACTCGACGTCAACTACAAAACCATTTATCAAAATCGCATAATGCTCCCCGAAATTATAAATGTCAGTATTGTGACAAGAGATTTGTACAATCACACCATTTAAAAAATCATGAGAATACGCATACGGGTGCCAGACCATTTTTGTGTACAGCATGCGGAAAAACGTTTCGAAATGATAGTACATTTTCCGTGCATCGTATGAAGTGTGATCCATTACATACGCGGTATAATTCTAACAAATGCGAACTATGTGACAAATCATTTATATTGAAATCCTACCTTCTCGATCACATTCGTGCGCATGCCGGTGAGAAAACGTTCGTTTGCGATTTATGTGACCGACGATTTGTTCGAAAGGTAACATTGAAGTTGCATATACGAAACCATTTCCAAATTGACACGGGTAACATTGAGAGCAATAGTATGACATTTCAATATAAATGTAAAATATGTAATCAACGATTTCGATATCAACCGTCGTTAACCAAACATATGGAATGTCATGCGAATGAGGAGGAACGTAAATACGTGTGTCAGACATGCAACCAGACGTTTAAAAGTTCCGCCCATTTACGTATCCATGTCGATGGTGTACATTTACGATTGAAAAGGTATGGGTGTGATATGTGCGAGAAAACGTATTATAGTCGAGGTACGTTAAACGAGCATACATCCGCAGCCCATCAGATGGAATGCAAATATGAATGTCCGCATTGTGGTAAGAAAGTACGGAGGGCTAATGCGTTACGTCAGCACATGAGAATTCATACCGGCGAGAAGCCGTATCAATGTGATATGTGTGGTGCACGCTTCAGACGATATGGGGGAATGACAAATCATATAAGGAGGAAAGGAGGATTGTGTTCGGCAGAACTGAAACCTCATTCTGATCCCTCTGGCGATGAATAG
- Protein Sequence
- MKNPDILKIDETKVKRLKNPNRIDEKTIKMKVTTMISKRITELDKLLKNILRDNVSIEEQQLFLQYNERPDFPSLQWFEPTSNSAIDLEQTCRVCVRVMAKLEKRVSLFPDPTGNNFKTDFRELNSMNLKIYQDDGLPQNICAPCATRLEQLKEFCLQVVRAQYILQAYFDRIDKTNDLDDTFDPNQQMEDVGIEYLKAEPPIDIFDFSGLDPPPENTEINKFLYQRDKDIESNGKMIDISEFEVVNIANDLKFKCNDCEVTFQEYVELYDHRQICKEPKSEPATITAPVDLVEEQRDDDDFWWNEINSIQSTESIAYAPKKKAVKRVKLKEKKLNEKTKTKTRKIENDPMGNYRFSRYCGICRTTFHSFANRNEHMLIHNKGNHQCKKCDCNFEVKIDLTAHYNEVHPSPIICLQCNRIFKTRRQLQNHLSKSHNAPRNYKCQYCDKRFVQSHHLKNHENTHTGARPFLCTACGKTFRNDSTFSVHRMKCDPLHTRYNSNKCELCDKSFILKSYLLDHIRAHAGEKTFVCDLCDRRFVRKVTLKLHIRNHFQIDTGNIESNSMTFQYKCKICNQRFRYQPSLTKHMECHANEEERKYVCQTCNQTFKSSAHLRIHVDGVHLRLKRYGCDMCEKTYYSRGTLNEHTSAAHQMECKYECPHCGKKVRRANALRQHMRIHTGEKPYQCDMCGARFRRYGGMTNHIRRKGGLCSAELKPHSDPSGDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -