Basic Information

Insect: Symmerus nobilis
Gene Symbol: -
Assembly: GCA_027564815.1
Location: JANTOP010021226.1:14103-16043[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.05 1.8 9.3 0.9 2 21 156 175 155 176 0.91

2 12 0.069 2.4 8.9 0.2 1 23 210 233 210 233 0.90

3 12 0.00028 0.01 16.4 1.7 2 23 240 261 240 261 0.97

4 12 0.00021 0.0074 16.8 5.8 1 23 267 289 267 289 0.98

5 12 0.00035 0.012 16.1 0.7 1 23 295 317 295 317 0.94

6 12 1.8e-06 6.3e-05 23.3 0.7 1 23 333 355 333 355 0.99

7 12 0.00023 0.0083 16.6 3.4 1 23 361 384 361 384 0.94

8 12 4.3e-06 0.00015 22.1 0.9 1 23 405 427 405 427 0.98

9 12 4.4e-07 1.6e-05 25.2 0.9 1 23 434 457 434 457 0.98

10 12 3.7e-05 0.0013 19.2 1.0 1 23 463 485 463 485 0.98

11 12 1.9e-05 0.00066 20.1 2.2 1 23 490 512 490 512 0.97

12 12 0.00025 0.0088 16.5 5.4 1 23 518 540 518 540 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.05	1.8	9.3	0.9	2	21	156	175	155	176	0.91
2	12	0.069	2.4	8.9	0.2	1	23	210	233	210	233	0.90
3	12	0.00028	0.01	16.4	1.7	2	23	240	261	240	261	0.97
4	12	0.00021	0.0074	16.8	5.8	1	23	267	289	267	289	0.98
5	12	0.00035	0.012	16.1	0.7	1	23	295	317	295	317	0.94
6	12	1.8e-06	6.3e-05	23.3	0.7	1	23	333	355	333	355	0.99
7	12	0.00023	0.0083	16.6	3.4	1	23	361	384	361	384	0.94
8	12	4.3e-06	0.00015	22.1	0.9	1	23	405	427	405	427	0.98
9	12	4.4e-07	1.6e-05	25.2	0.9	1	23	434	457	434	457	0.98
10	12	3.7e-05	0.0013	19.2	1.0	1	23	463	485	463	485	0.98
11	12	1.9e-05	0.00066	20.1	2.2	1	23	490	512	490	512	0.97
12	12	0.00025	0.0088	16.5	5.4	1	23	518	540	518	540	0.99

Sequence Information

Coding Sequence: ATGTCTAAAATCCATCCTGGAATTGTTTGTGATATGAAAGATGTTTGCCGAACGTGTGTTCGTATTATGACATCGCAACAAAAACGAATTTTACTATTTACCATTGACAACGATTTCAAAGATCAGTCGCCACGGGTCGATTCAAACGACTTTGATCTTCAAAAATATAATATAAACCGAAACGATGGATTACCGCAACAGATATGTTATCGATGTTCCTGTCGATTAGTTGAAATTAATGAATTTCATCAGCAGATTAAACAATCTCAAGAAATTTTAGGGAAATGTTTTAAACAAGAATCATTATTGAAAGAAGGAAATCGTACAGGAACCTCTGATGTAACTGTTCCTGCTATAGATGTTTTAAAGATTGATATGCTTCAATTCGTGGAGGGTGAAGTCGAAAATCTAGAAAGAGGTACCGACGATGAGTACCAGTCAGATGCGGGTAGAGAATTAAAATTAAATTGTAATAATTGTAATGAATGTTTCAATACAAAGATTGAAATATTGGATCATCTGAAACAATGTAAAGCAAATCGAAAAATACGTTCCAAATTGAAGAAATGTCGACCGAAAATGATTGATGATAATCAATCTGATCTAAAAAATGGCAAATGCTTCGATTATCCTTGCGATGAATGCGAAAAAGTGTTTTTGGTCAAGGGTGTCTTGAATCAACATAAAAAATTTGTTCACGCAATACCGTGTGTGGAAGTGTGTCCGATATGTCATGTAACCTTCACAAATCCATACCGGTACAAATATCATTTGAAAAAGCATGAACCAAATAAGAAATATAAATGTAAATATTGTGATAAATCATTTTTACAACCACATCACTTGAAAGATCATGAAAGTACACATACCGGTGTTAAACCGTATTTATGTGCGGCTTGTGGGAAAGGTTTCAACAGTAGTGGTACATTTAGCCATCACATTCGAATACATAAAGACTTTACGTTACATAAACGGAACCCATCAACAATTAAACAATATAAATGCGATTATTGTTTTAAAATATTTGCCCAAAAAGGTTCGTTAGACGTCCATATCCGTACACATACCGGCGAAAAACCGTTTCAATGTCAGGACTGTAATTTAAGTTTTGCCCAAAAGGGTACATTGAACAATCACTATTATAATTGCCATACAAATCGAACGGACACCGAAACAAACGTTTCAACAACAACTAAAACGAATAATTACCTTTACAATTGTACGGTTTGTGAGAAAAAGTTTAGTTCGCCAACATCCCTAAACACCCACATCGAAAAACATAATGAATCGTCCCGGAAATATATTTGTCCAACGTGTGGGACCGCTTTTAAGCGGGACAGCCATCTACGCAATCATATCAATACGGTACATTTAAAATTGAAACCGTACAATTGTACGAAATGTGATAAATGCTTTGCAATGGTCGGCGGATTGAATGAACACATGAAAGTTCATAATAATGAATTGTTTGATTGTTCGTATTGTAAGCGAACGTTCAATTTGAAGGGTACGTTAAGGGTTCATATGCGACAACATACCGATGAACGACCATACCGATGTGATTATTGTGGAAACAATTTCAAAACGCATGCATCTTTTAAATATCATTTAAGGAAACATGCAACCGGACAAGTTATATAG
Protein Sequence: MSKIHPGIVCDMKDVCRTCVRIMTSQQKRILLFTIDNDFKDQSPRVDSNDFDLQKYNINRNDGLPQQICYRCSCRLVEINEFHQQIKQSQEILGKCFKQESLLKEGNRTGTSDVTVPAIDVLKIDMLQFVEGEVENLERGTDDEYQSDAGRELKLNCNNCNECFNTKIEILDHLKQCKANRKIRSKLKKCRPKMIDDNQSDLKNGKCFDYPCDECEKVFLVKGVLNQHKKFVHAIPCVEVCPICHVTFTNPYRYKYHLKKHEPNKKYKCKYCDKSFLQPHHLKDHESTHTGVKPYLCAACGKGFNSSGTFSHHIRIHKDFTLHKRNPSTIKQYKCDYCFKIFAQKGSLDVHIRTHTGEKPFQCQDCNLSFAQKGTLNNHYYNCHTNRTDTETNVSTTTKTNNYLYNCTVCEKKFSSPTSLNTHIEKHNESSRKYICPTCGTAFKRDSHLRNHINTVHLKLKPYNCTKCDKCFAMVGGLNEHMKVHNNELFDCSYCKRTFNLKGTLRVHMRQHTDERPYRCDYCGNNFKTHASFKYHLRKHATGQVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -