Snob008759.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010025004.1:23201-25854[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00016 0.0058 17.1 1.9 2 23 156 178 155 178 0.96 2 16 0.0019 0.068 13.8 1.5 1 23 209 231 209 231 0.98 3 16 3.2e-05 0.0011 19.4 0.2 1 23 238 260 238 260 0.98 4 16 0.00018 0.0065 17.0 0.5 1 23 266 288 266 288 0.97 5 16 0.0011 0.038 14.6 0.1 1 21 293 313 293 316 0.89 6 16 0.02 0.72 10.5 3.8 1 23 322 344 322 344 0.98 7 16 7.2e-05 0.0025 18.3 0.5 1 23 349 372 349 372 0.93 8 16 2.2e-05 0.00079 19.8 0.9 2 23 433 455 432 455 0.96 9 16 0.15 5.1 7.9 3.6 3 23 477 498 476 498 0.97 10 16 0.004 0.14 12.8 4.3 1 23 516 538 516 538 0.96 11 16 2.3e-05 0.00083 19.8 0.3 2 23 546 567 545 567 0.96 12 16 0.042 1.5 9.5 2.3 1 23 573 595 573 595 0.98 13 16 0.15 5.3 7.8 0.0 1 20 600 619 600 623 0.88 14 16 0.00023 0.0081 16.7 4.3 1 23 629 651 629 651 0.97 15 16 0.032 1.1 9.9 2.4 1 23 656 678 656 678 0.95 16 16 0.0085 0.3 11.7 5.2 1 23 683 706 683 707 0.95
Sequence Information
- Coding Sequence
- ATGGATTTTAATCACATGTGTCGAATCTGCTTATCAGATATCACCAATGGATATAATTTATTTGAGAATTTACCAATGGGAATGAAGAGCAGCGAAGAGGTAAACATAGCCCATGTCCTAGTCTCATTAACCCAATTAGATATTGACCCGGAAGATCGGTATCCACAACAAATTTGTCAAGATTGCTTTAACAGGATAAGGAAGGTATACGAATTTCAACAAAAATGTATCCAGAGTTCGACAATATTGAGGCTAAACTTGGCGAATGCTTATTATTTGAATGAAGATATAAAACAAACCGAGGTCGATGAAAAGTTGGTAGTCGATGATGCTTGCCAGTCAAATATATACGAAATTACTATAAAACCGGACAATTATATTAAGATCGAGGAGCATATTGACATTGACGAAGGCAATATCGAGAAAAATGTTCCTGCACAAAAATTCATAGATGAACCAAGAATTTCCTGTTCGTTTTGTACCAAATCATTTACGGCAAAAAGTAGCTATACGCGTCATCTTAAAATCTATCATCCGGATCCGGACAAATTGGGGATATCACTAGGACCACTTAGGAATATAGAAAAAGTCTATGAAACAGATTGGGATGAAAATCGTAAAGGTTATCCCTGCCAAATATGCAATAAAACATTGAAATTAAAAAAGTATTACGATTCACATATGAAAGTTCATATGGGTGAAAACAAGAAGTACTCTTGCGACATTTGCGGGAAGCAATTCAACATTAAAGATTCGGTAAGGGATCACATGAACATTCATTCAAACAGCCGACCGTACGAATGTGATGTGTGCGGAGCATCATTCCGTCAGATCAGTTCATACAAAATGCACAAGCAACTACACACGGGAAAGAAGTATAAATGTGATAAATGTGATGTCGGATTTGTGACAAAGGGACTGTTAACCGATCATAATGTGATCGTGCATGAGGGTGTCCGGAGATTTAAATGTGTCGTCTGTTCGAATAGATATTTTCGAAAGTCTCACTTGGATAGTCATATGTTCGTTCATAGGGAAAGACCGTTTTTATGTCCCGTCTGTGCAAAAGAATTTTCTCGTCCCCATAGCCTTAAGGTACATTTAAAAGATGTACATCAACTATCGGAACCATTGGATGATTACATCAAGGTAGAGCCAACCAGAACTACGGAAATTATAAAAGAAGTGGAAGTAGTTGATGCAGAGAAATGTATTAAACGGGAATTTGTTAATTTTAAAATAAAAGAATTCCCACAGATCAAGGAGTCCAACGAGTTGGAGAACGAACGAAACATTTCATGTTCAATTTGTAAAAAAACATTCTCAAAACAAGGGAATTATGATCGTCATGTTCGAATATATCATCCCGATATAATTGGAAACAATTCTCTCCCGGAATCGAATGAAAATCAAGAAGATGATAATTTCTGTACAATTTGCATCAAGAAATTTAAATCCAAAGCTTTCTATAAGAATCATTTCCGTAAATATCATTCCTCCGACAAGATAGGTGAACGGATGGAATTGGAAGGAAACCCAGAAGGATACCTCTGTCAAATTTGCCATAAAACATTGAAATTTAAAAAGTATTTTGAATTGCATATGAAGGTGCACACGGGTGACAATATAAAATTGATATGCGAGATTTGCGGTAAGCAATTCAATATAAAAAAATCGTTAAGGGATCATATGAATATTCACACGAATACCAGACCGTACAAGTGTCAAGTATGCGCGGCTACATTTTCCTACATCGGTTCATACAAACATCACAAGCAATTGCATACGGGTAAAAAGTTTCAATGCGAAGAGTGTAATGTGGGTTTCGTCGCAAAGGCTATGTTGGTCGAACACAATGTCATCGCTCACGAAGGTGTACGACGATTTAAATGTGACATGTGTCCGAAAAGTTACTTTCGAATGTCTCACTTAAATAATCATCGATTATATCATCGTGCGAATCGGTTTGCATGTAAGGTTTGTAAAAAGGAGTATCTGCACAAGGAATCGTTGCGGGCCCATCAATTTCTACATACGGGGAAACCATTTTCATGCTCCCTATGCTCGAAGGAGTTTATTAAACGTTACTTATTTAAAAAACATCTAAAGGACTTTCATCATCTTTCTGAGCCATTTGATGATTTAATTGAGAGGAAGATTCCGAAGAAGTAA
- Protein Sequence
- MDFNHMCRICLSDITNGYNLFENLPMGMKSSEEVNIAHVLVSLTQLDIDPEDRYPQQICQDCFNRIRKVYEFQQKCIQSSTILRLNLANAYYLNEDIKQTEVDEKLVVDDACQSNIYEITIKPDNYIKIEEHIDIDEGNIEKNVPAQKFIDEPRISCSFCTKSFTAKSSYTRHLKIYHPDPDKLGISLGPLRNIEKVYETDWDENRKGYPCQICNKTLKLKKYYDSHMKVHMGENKKYSCDICGKQFNIKDSVRDHMNIHSNSRPYECDVCGASFRQISSYKMHKQLHTGKKYKCDKCDVGFVTKGLLTDHNVIVHEGVRRFKCVVCSNRYFRKSHLDSHMFVHRERPFLCPVCAKEFSRPHSLKVHLKDVHQLSEPLDDYIKVEPTRTTEIIKEVEVVDAEKCIKREFVNFKIKEFPQIKESNELENERNISCSICKKTFSKQGNYDRHVRIYHPDIIGNNSLPESNENQEDDNFCTICIKKFKSKAFYKNHFRKYHSSDKIGERMELEGNPEGYLCQICHKTLKFKKYFELHMKVHTGDNIKLICEICGKQFNIKKSLRDHMNIHTNTRPYKCQVCAATFSYIGSYKHHKQLHTGKKFQCEECNVGFVAKAMLVEHNVIAHEGVRRFKCDMCPKSYFRMSHLNNHRLYHRANRFACKVCKKEYLHKESLRAHQFLHTGKPFSCSLCSKEFIKRYLFKKHLKDFHHLSEPFDDLIERKIPKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -