Snob013748.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010033338.1:7848-13126[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.019 0.67 10.6 0.5 2 23 175 197 174 197 0.97 2 18 0.065 2.3 8.9 0.0 2 23 204 225 203 225 0.89 3 18 0.0016 0.057 14.0 0.8 1 23 231 254 231 254 0.95 4 18 0.0017 0.061 13.9 0.8 1 23 259 282 259 282 0.98 5 18 0.00056 0.02 15.4 0.7 2 23 289 311 288 311 0.96 6 18 0.57 20 6.0 3.1 2 23 318 340 318 340 0.95 7 18 0.44 16 6.3 2.1 2 23 348 370 347 370 0.96 8 18 5e-05 0.0018 18.8 2.7 3 23 379 399 377 400 0.94 9 18 0.081 2.9 8.7 1.5 2 23 549 571 548 571 0.97 10 18 0.0062 0.22 12.2 0.3 2 23 578 599 577 599 0.94 11 18 0.0035 0.13 12.9 2.1 1 23 605 628 605 628 0.96 12 18 1e-05 0.00037 20.9 2.0 1 23 633 656 633 656 0.98 13 18 8.7e-05 0.0031 18.0 1.0 2 23 662 684 662 684 0.97 14 18 0.00081 0.029 14.9 0.6 3 23 692 713 691 713 0.96 15 18 0.1 3.6 8.3 0.6 2 23 721 743 720 743 0.95 16 18 0.00036 0.013 16.0 0.7 3 23 752 773 750 773 0.96 17 18 1.5e-06 5.2e-05 23.6 0.3 1 23 778 800 778 800 0.98 18 18 2.6e-05 0.00092 19.6 1.6 1 23 807 830 807 830 0.98
Sequence Information
- Coding Sequence
- ATGGATTCGAAAATCTGTATTTTGTGTTTAACAAATCCGGAAGATTATCAATCTTTATACCCAACCAGGATCGGAAATGATAATTTAGACGAGGTTTTGCGATTACATTTCTGGGAGGTTCAGATGAATGAACCGATAATTATTATGTGTAAATCCTGTTTGGAAAAAGTCACCACTTTCCATGAATTTTACTTGGAAGTCCGAACCATTCACGATCAATTTAAGGAACAAAAATGTTCGAACACTCCGTTCTATGAATGTAATATCAAAGAAGAGCCGGAACTTGAAATTTCTACAAACAATTTATCGGATAATGGTGAGTATGATACGGACATGCCGGACGAACACAATGAAAGTGAATTCGATGTGAAAAACGGTGTCGGTAAATCGTATAAGGAGGACAGTCCCAAACCAAGTTTCGGATCCAAGAAAGTGAGAAGAATACCGAAAGATGCTAAACCGGAGAGTTGTAAATTAATCTTGGAAAAGAATTATGAGAAATTTATACAACGATTCTCGATGAAATGTCAATTATGTTCCGTCTCCTTTGCATCTTTGAACGAGGCCCGAAAACATTACCGTTCGGAACACAATCGTAACGGTTATTTGATTTGTTCGGATTGTGACCGACCGTTTTCCGATTACGGGCGAATTGTTGATCATTTAGAATGGCATGACGATCCGGCTAGATTTATATGTTCAATATGTAATAAACCATTCGTAGATGGTACGTGTATGAGAAGACATATAAAGGATATCCATGGTGCCAGAACGTACAAATGTGACCAATGCAACGTGGCATTTTCATATCGGAATCCCTATGTCTATCATATGAAGACCATTCATCCAGAGAATGAAAATATAGAATGTAATCAATGTGAAAAGAAGTTGAAAACCGAGGAATCATTACGGTCTCATATTAAGAAGGTTCATGAAAATTCTGATTCCCGCACATGTGATATATGTTCCAAATTCTTCAAATGTTCCCGCACCTATGAACTGCATTACAAAGTCGTCCATACGAACACTATGGAGAAGGTGAAGTGCGATATATGTGGTACATGGATAAAACATATCCACTTACTAAAGGACCACATGAATCGGCGACATAAACGACAAGGTGTACCACAAATTTGTAAATATTGTGGGAAAACTACGAACAATCGAAAATCGTTATTGAATCACATTCGATGGCATCATTCAAACATTTCCTATCCTTGTCATGTGAATGAACGGATAATTATTATGTGCAAATCCTGTTTAGAAAAGGTCACCACTTTCCATGAATTTTATTTGGAAGTACGAACAATTCACGATCAATTTAAGGAACAGAAATTTAATTCTTTTTTCTGTGAAAATATTATCAAGGAAGAGCCGGAACTGGACATTTCGATAAACAATTTATCGGATAATGATGAATATAATACGACGGATATGCTGGACGAACAGAATGAAAGTAAATTCGTTGTGGGAACTTGTATCGGTAAATCGGATAAGGAGGAAAGTCCAAAACCAAGTTATAGTCCAATGAGCAGAATAACATCTATTGATTTAAAGACGAGCAAATCGAAAGATGCTAAACCGGAGAGTTGGGAAGCAATTTTGGAAAAGAATTATGAGAAATTTTCACTTAGATTCTCGATGCAATGTCAACAATGTTCAGTATCCTTTCAGTCATTAAACGATGCCCGAAAACATTACCGTTCCAAACACAATCGTAACGGTTATTTGGTGTGTTCGGATTGTGACCGACGGTTTTCCAAATACAAACAAATTGTTGATCATTTAGAATGGCATCAAGATCCAGAGAAATTTATATGTACAACATGTAATAAAACATTCGTAGATGGTACTCGTTTGCGAACACATGTACGGCATATCCATGGTGCTAGAATTTACAAATGTAACCAATGTGACACGAAATTTACGCGTCAGAATCCCTTAACTTATCATATGCAGACTGTACATTCTGAGAATGAAAATGAATGTAATCAATGTGAAAAGAAATTTAAATACGAGGCATCATTACGCTATCATATTAGGAAAGTTCATGAAAATTCTGATTCCCGTATATGCGATATATGTGCGAAATTCTTTAAAAATTCCAAAAACTATGAACTTCATTACAAAGTCATGCATACGAATACAATGGAAAAGGTGAAGTGCGATATATGTGGATACTGGTTGAAGCATTACGGTATGCTGAGGGTGCACATGAGTTATAAACATAAGCAACCAGCTGTACCACAAATTTGTACATATTGTGGGAAAACTGCGACCAATCGTAAATTTTTATTGATTCACATTCGAAGTCAACATTCAAATATTTCCTACACTTGCCAAATCTGTGATAAATCGTTTAAACAAACGGTAGCGTTAAaggaacatatggctattcattcggggaacaaggaactgtatacatgtagtttttgtccgaaaacattccgatcaaatgctaacatgtatgcacatcgaaaaaaagcgcatccGATCGAATATCAGCAATTCAAAGACCTTAAAATGACTGGAATTGATGTCAAAGATAGTGTTTAG
- Protein Sequence
- MDSKICILCLTNPEDYQSLYPTRIGNDNLDEVLRLHFWEVQMNEPIIIMCKSCLEKVTTFHEFYLEVRTIHDQFKEQKCSNTPFYECNIKEEPELEISTNNLSDNGEYDTDMPDEHNESEFDVKNGVGKSYKEDSPKPSFGSKKVRRIPKDAKPESCKLILEKNYEKFIQRFSMKCQLCSVSFASLNEARKHYRSEHNRNGYLICSDCDRPFSDYGRIVDHLEWHDDPARFICSICNKPFVDGTCMRRHIKDIHGARTYKCDQCNVAFSYRNPYVYHMKTIHPENENIECNQCEKKLKTEESLRSHIKKVHENSDSRTCDICSKFFKCSRTYELHYKVVHTNTMEKVKCDICGTWIKHIHLLKDHMNRRHKRQGVPQICKYCGKTTNNRKSLLNHIRWHHSNISYPCHVNERIIIMCKSCLEKVTTFHEFYLEVRTIHDQFKEQKFNSFFCENIIKEEPELDISINNLSDNDEYNTTDMLDEQNESKFVVGTCIGKSDKEESPKPSYSPMSRITSIDLKTSKSKDAKPESWEAILEKNYEKFSLRFSMQCQQCSVSFQSLNDARKHYRSKHNRNGYLVCSDCDRRFSKYKQIVDHLEWHQDPEKFICTTCNKTFVDGTRLRTHVRHIHGARIYKCNQCDTKFTRQNPLTYHMQTVHSENENECNQCEKKFKYEASLRYHIRKVHENSDSRICDICAKFFKNSKNYELHYKVMHTNTMEKVKCDICGYWLKHYGMLRVHMSYKHKQPAVPQICTYCGKTATNRKFLLIHIRSQHSNISYTCQICDKSFKQTVALKEHMAIHSGNKELYTCSFCPKTFRSNANMYAHRKKAHPIEYQQFKDLKMTGIDVKDSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -