Snob004759.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010009894.1:20150-25315[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00046 0.016 15.7 0.4 3 23 204 225 202 225 0.95 2 18 0.38 13 6.5 0.3 6 23 234 251 234 251 0.97 3 18 1.8e-05 0.00062 20.2 1.5 1 23 257 279 257 279 0.98 4 18 0.035 1.2 9.8 1.4 1 23 286 309 286 309 0.96 5 18 3.3e-05 0.0012 19.3 0.2 1 23 318 341 318 341 0.91 6 18 0.0015 0.052 14.1 0.1 2 23 348 370 347 370 0.96 7 18 0.21 7.3 7.4 0.3 2 23 379 400 378 400 0.96 8 18 0.00056 0.02 15.4 0.1 2 23 406 428 406 428 0.95 9 18 0.014 0.48 11.1 1.6 1 16 433 448 433 449 0.94 10 18 0.00089 0.031 14.8 0.5 3 23 617 638 615 638 0.95 11 18 0.44 15 6.3 0.6 6 23 647 664 647 664 0.97 12 18 3.7e-05 0.0013 19.2 1.2 1 23 670 692 670 692 0.97 13 18 0.045 1.6 9.4 0.2 1 23 699 722 699 722 0.96 14 18 1.5e-05 0.00051 20.4 0.2 1 23 731 754 731 754 0.92 15 18 0.00032 0.011 16.2 0.1 1 23 760 783 760 783 0.98 16 18 0.068 2.4 8.9 0.4 2 23 792 813 791 813 0.96 17 18 0.00082 0.029 14.9 0.3 2 23 819 841 819 841 0.95 18 18 8e-06 0.00028 21.3 1.2 1 22 846 867 846 867 0.96
Sequence Information
- Coding Sequence
- ATGTCGAAAATAAAATGTCGTTTGTGTAACGTGGATACAAAGAATGGATTAGACATTTATGGACCGGAGGGTGTAAAGTTATCGATAGCTAAAATATTAAATCAACATTTTACATTACAGTTCGTTGCGGATGATATTTTTTCAAAAATAATTTGTATGAAATGTTGGAAAATTACCGTTCAATTTCACAGTTTATATTGTGCTGTTCAAGAAATTGAAACGAAATTGAAAATAAATGGAGATGAAAACTGTGTAGTTTTAACGACTATCGATCAATCGATTTACGATGATGTAAAGCAAGAAAATGATCTTGTCGAAGAGGAATCAAAATCCGATTCAATTATTGCTAACCTGTCAAGCGGATGTATCGTAGAAGCAGATAATGTTAAACTTGAAGATTTATTTAATGAAACAGGAGATGATTCTTTTGTTGTTGGTAGTAATTTTCTTAACGGGGAGCGGCGTAAATCCAATAAATTGTTGAAGAGAGAAATGAGAATTGGACAGAGAGGTTTGAAGGATCAATCAAAGAAAAGTATAAAAATATGGGCCAGTCAGAAGGAAGTGAAAGAACAAGAAGAAACAATTTGTAATGAATTGGCAATGATATGCGATATTTGTAATAAGAAAACTACAACATATCCGGAATTGAAAAGTCACATCCGATTAAGTCACAATGTACCGGGGTACGTTAGATGTTGTAGTGAAAAGTTCTTTAGGCGTGGAAAGCTATATGCACATATTCGGGATCATAATAGCTTTGGCCAATTTAAGTGTGACAAATGTGATAAAATTTTTATTGATAAAGCACATTTAGATAAGCATGTTAATCTTCACAATCCGCTATCGAAAAAATATCATTGTAGTAAATGTTCTAGACGGTTTCTAGTGCCGTCTACGTTAAATGAACATCTACTCAGCGTACACAGAACATCTGATACAATTAAAAGTTTCATTTGTGATATTTGTGGAAAAGCTTTCGTAACCAAAAAATTGTTGAGTTCGCATATAGATTTTGTGCATATTCAGAGATACACATCCGTATGTGATATTTGTGCGAAGGTTTATCCAAGTAAAGCAGCGTTAACCTATCACTATCAAACCCTTCATCTAAACGTAAAATTGCCAAAAGTTCAATGTACGCTATGTGGTATTTGGCTAGCACATTTAATTTCTCTGAAGAAACATATGCAATTGCATGAACAAAAGGAGGAGACGTGTCAATTGTGTGGTAAGGTTTCGCCAAACAATCAAGCACTTAAAAGTCATATACGGGCAGTACATAATTCCCAAACATTTCGTTGTACAGTTTGTGAAAAGACATTTAAATCGAAGAAGACTTTAAGCTTCGTTGCGGATGATATTTTTTCAAAAATAATTTGTAAGAAATGTTGGAAAATTACCGATCAATTTCACAGTTTATATTGTGCTGTTCAACAAATTGAAACGAAATTGAAAATAAATGGAGAAGAAAACTTTGTAGTTTTAACGACTATCGATCAATCGATTTACTCTGATATAAAGCAAGAAAACGATCTTGCCGAAGAGGAATCAAAAACCAATTCAATTATTGCTAACCTGTCAAGCGGATGTATCGTAGAAGCAGATAATGTTAAACTTGAAGATTTATTTAATGAAACAGGAGATGATTCTTTTGTTGCTGGTGGTCATTTTCTTAACGGAGAGCGGCGTAAATCCAATAAATTGTTGAAGAAAAAATTGAAGAGAGAAATGAGAATTGGACAGAGAGCTTTGAAGGATCAATCAAAGAAAAGTATAAAAACATGGGCCACTAAGGAGGAAGTGAAAGAACAAGAAGAAACAATTTGTAATGAATTGGCAATGATATGCGATATTTGCAATAAGAAAACTACAACATTTCCGGAATTGAAAAGTCACATTCGATTAAATCATAATGTACCGGGGTACATTAGATGTTGTAGTCAAAAGTTCTTTAGGCGTGGAAAGCTATATGCACATATTCGGGATCATAATAGCTTTGGCCTATTTAAGTGTGACAAATGTGATAAAATTTTTATTGATAAAGCACATTTAGATACGCATGTTAATCTTCACAATCCACTATCGAAAAAATATCCTTGCAGTAAATGTTCTAGACGGTTTCTCGCGCCGTCTATGTTAAATGAACATCTACTAAGCGTACACAGAACATCTGATACAATTAAAAGTTTCATTTGTGATATTTGTGGAAAAGCTTTTGTAACCAAAAAATTGTTGAGTTCGCATATGGATTTTGTGCATATCCAGAGATACACATTCGTATGTGATATTTGTGCGAAGGTTTATCCAAGTAAAGCAGCGTTAACCTATCACTATCAAACCCTCCATCTAAACGTAAAATTTCCAAAAGTTCAATGTACGCTATGTGGCATTTGGCTGGCACATTTAATTTCTCTGAAGAAACATATGCGATTGCATGAACAAAAGGAGGAGACGTGTCAATTGTGTGGAAAGGTTGCGCCAAACAATCATGCACTTAAAAGTCATATACGGGCAGTACATAATTCCCAAATATTTCGTTGTACAGTTTGTGGAAAGACATTTAAATCGAAGAAGACTTTAAGCgaacatCTTAATACAGACAGATCAAAAATTGTATGTAAGAAATGTTGGAAAATAACTGAAAAATTTCATAAATTATATTGTATCGCTAAGCGGGTTGAAACTATGTATCTAGATGCGATGAGTTCAAATGGAGAGGAAACATTTGAACCGATTGATAAGAATGTTTATTTACAAATCAAAGAAGAATTTGATTTGGAACCGGAATCGAAAGGTTGCGTAGATGATTTAATCGAAGAAAATCCAATATTAAATGAACCAATTAAATTTGAAGGTATAATTATACTTTTCGAAAATATTTCATAG
- Protein Sequence
- MSKIKCRLCNVDTKNGLDIYGPEGVKLSIAKILNQHFTLQFVADDIFSKIICMKCWKITVQFHSLYCAVQEIETKLKINGDENCVVLTTIDQSIYDDVKQENDLVEEESKSDSIIANLSSGCIVEADNVKLEDLFNETGDDSFVVGSNFLNGERRKSNKLLKREMRIGQRGLKDQSKKSIKIWASQKEVKEQEETICNELAMICDICNKKTTTYPELKSHIRLSHNVPGYVRCCSEKFFRRGKLYAHIRDHNSFGQFKCDKCDKIFIDKAHLDKHVNLHNPLSKKYHCSKCSRRFLVPSTLNEHLLSVHRTSDTIKSFICDICGKAFVTKKLLSSHIDFVHIQRYTSVCDICAKVYPSKAALTYHYQTLHLNVKLPKVQCTLCGIWLAHLISLKKHMQLHEQKEETCQLCGKVSPNNQALKSHIRAVHNSQTFRCTVCEKTFKSKKTLSFVADDIFSKIICKKCWKITDQFHSLYCAVQQIETKLKINGEENFVVLTTIDQSIYSDIKQENDLAEEESKTNSIIANLSSGCIVEADNVKLEDLFNETGDDSFVAGGHFLNGERRKSNKLLKKKLKREMRIGQRALKDQSKKSIKTWATKEEVKEQEETICNELAMICDICNKKTTTFPELKSHIRLNHNVPGYIRCCSQKFFRRGKLYAHIRDHNSFGLFKCDKCDKIFIDKAHLDTHVNLHNPLSKKYPCSKCSRRFLAPSMLNEHLLSVHRTSDTIKSFICDICGKAFVTKKLLSSHMDFVHIQRYTFVCDICAKVYPSKAALTYHYQTLHLNVKFPKVQCTLCGIWLAHLISLKKHMRLHEQKEETCQLCGKVAPNNHALKSHIRAVHNSQIFRCTVCGKTFKSKKTLSEHLNTDRSKIVCKKCWKITEKFHKLYCIAKRVETMYLDAMSSNGEETFEPIDKNVYLQIKEEFDLEPESKGCVDDLIEENPILNEPIKFEGIIILFENIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -