Basic Information

Insect: Symmerus nobilis
Gene Symbol: -
Assembly: GCA_027564815.1
Location: JANTOP010003007.1:12534-22569[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 0.29 10 6.9 2.0 6 23 219 236 219 236 0.97

2 32 0.00073 0.026 15.1 1.5 1 23 242 264 242 264 0.98

3 32 0.00015 0.0053 17.2 2.1 1 23 271 293 271 293 0.99

4 32 0.14 4.9 7.9 1.6 1 23 300 323 300 323 0.94

5 32 0.0054 0.19 12.3 0.2 3 23 331 352 329 352 0.94

6 32 4.3 1.5e+02 3.2 3.1 2 23 361 383 360 383 0.96

7 32 0.00024 0.0084 16.6 1.2 2 21 389 408 389 409 0.95

8 32 0.0046 0.16 12.6 0.3 2 23 573 595 572 595 0.94

9 32 0.099 3.5 8.4 2.7 6 23 604 621 604 621 0.98

10 32 3.8e-05 0.0013 19.1 3.5 1 23 627 649 627 649 0.98

11 32 0.012 0.43 11.2 1.4 1 23 656 679 656 679 0.93

12 32 0.038 1.4 9.7 0.7 1 22 686 707 686 709 0.89

13 32 3.8 1.3e+02 3.4 1.5 3 23 860 881 858 881 0.96

14 32 2.9 1e+02 3.8 0.2 6 23 890 907 890 907 0.95

15 32 0.00043 0.015 15.8 1.0 2 23 914 935 913 935 0.97

16 32 0.0015 0.055 14.1 2.6 1 23 943 966 943 966 0.97

17 32 0.0047 0.17 12.5 1.2 1 23 974 997 974 997 0.93

18 32 0.0038 0.13 12.8 0.8 1 23 1003 1026 1003 1026 0.95

19 32 0.091 3.2 8.5 0.9 2 23 1034 1055 1033 1055 0.97

20 32 2.9 1e+02 3.7 5.5 2 19 1062 1079 1061 1084 0.89

21 32 7.1e-06 0.00025 21.4 0.7 1 23 1090 1112 1090 1112 0.99

22 32 0.00043 0.015 15.8 2.6 1 23 1118 1141 1118 1141 0.98

23 32 0.22 7.8 7.3 2.3 3 23 1298 1319 1296 1319 0.96

24 32 0.095 3.3 8.4 0.6 6 23 1328 1345 1328 1345 0.99

25 32 0.074 2.6 8.8 5.8 2 23 1352 1373 1351 1373 0.97

26 32 2.8e-05 0.001 19.5 2.2 1 23 1381 1404 1381 1404 0.98

27 32 0.0013 0.045 14.3 0.5 3 23 1414 1435 1412 1435 0.94

28 32 0.28 10 6.9 0.3 1 23 1441 1464 1441 1464 0.95

29 32 0.21 7.5 7.3 0.1 2 23 1472 1493 1471 1493 0.94

30 32 4 1.4e+02 3.3 3.9 2 19 1499 1516 1498 1521 0.90

31 32 0.00014 0.0048 17.4 0.2 1 23 1526 1548 1526 1548 0.97

32 32 0.00089 0.032 14.8 1.5 1 23 1554 1577 1554 1577 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	0.29	10	6.9	2.0	6	23	219	236	219	236	0.97
2	32	0.00073	0.026	15.1	1.5	1	23	242	264	242	264	0.98
3	32	0.00015	0.0053	17.2	2.1	1	23	271	293	271	293	0.99
4	32	0.14	4.9	7.9	1.6	1	23	300	323	300	323	0.94
5	32	0.0054	0.19	12.3	0.2	3	23	331	352	329	352	0.94
6	32	4.3	1.5e+02	3.2	3.1	2	23	361	383	360	383	0.96
7	32	0.00024	0.0084	16.6	1.2	2	21	389	408	389	409	0.95
8	32	0.0046	0.16	12.6	0.3	2	23	573	595	572	595	0.94
9	32	0.099	3.5	8.4	2.7	6	23	604	621	604	621	0.98
10	32	3.8e-05	0.0013	19.1	3.5	1	23	627	649	627	649	0.98
11	32	0.012	0.43	11.2	1.4	1	23	656	679	656	679	0.93
12	32	0.038	1.4	9.7	0.7	1	22	686	707	686	709	0.89
13	32	3.8	1.3e+02	3.4	1.5	3	23	860	881	858	881	0.96
14	32	2.9	1e+02	3.8	0.2	6	23	890	907	890	907	0.95
15	32	0.00043	0.015	15.8	1.0	2	23	914	935	913	935	0.97
16	32	0.0015	0.055	14.1	2.6	1	23	943	966	943	966	0.97
17	32	0.0047	0.17	12.5	1.2	1	23	974	997	974	997	0.93
18	32	0.0038	0.13	12.8	0.8	1	23	1003	1026	1003	1026	0.95
19	32	0.091	3.2	8.5	0.9	2	23	1034	1055	1033	1055	0.97
20	32	2.9	1e+02	3.7	5.5	2	19	1062	1079	1061	1084	0.89
21	32	7.1e-06	0.00025	21.4	0.7	1	23	1090	1112	1090	1112	0.99
22	32	0.00043	0.015	15.8	2.6	1	23	1118	1141	1118	1141	0.98
23	32	0.22	7.8	7.3	2.3	3	23	1298	1319	1296	1319	0.96
24	32	0.095	3.3	8.4	0.6	6	23	1328	1345	1328	1345	0.99
25	32	0.074	2.6	8.8	5.8	2	23	1352	1373	1351	1373	0.97
26	32	2.8e-05	0.001	19.5	2.2	1	23	1381	1404	1381	1404	0.98
27	32	0.0013	0.045	14.3	0.5	3	23	1414	1435	1412	1435	0.94
28	32	0.28	10	6.9	0.3	1	23	1441	1464	1441	1464	0.95
29	32	0.21	7.5	7.3	0.1	2	23	1472	1493	1471	1493	0.94
30	32	4	1.4e+02	3.3	3.9	2	19	1499	1516	1498	1521	0.90
31	32	0.00014	0.0048	17.4	0.2	1	23	1526	1548	1526	1548	0.97
32	32	0.00089	0.032	14.8	1.5	1	23	1554	1577	1554	1577	0.95

Sequence Information

Coding Sequence: ATGGGACCGGTAAATATAATTTGTAGATTATGTCAATCCAAATTAGATAAAGGAATAGAAATATTTGGCAAGCAAGGATTGAAATTATCGATTGCTTCAATTGTATCAAAACATTTTGCTGTTAAGGTTGCCGAAAAGGATGAACAATCAAATATTGTTTGTAAGAAATGCTGGAAAACGACCGATCAATTTCATAAACTGTACTGTACCGTTGAAAAGATTACGGCAAAGAAAAACGTGTCTATCCGAGTACTGGAAACGGATATTAAAACAGAAAATTCATTAGATTACGTTGAATACGAATATTCGGTATCATATTTATCCGCAGACAGTTCGACAACTAATTTAAAAATTGAAAATGGTCCTGGAGGACATTATAACAAAAGAACTGATCAGTTGAATAAATTACCCTCGAATACCGAAACCCGTGGTATTGTTAATATAAACTCATTGGACGAAACAAAACTACAACAACCACAACGTTCGAATGATGACAGAAAATCGAACTGGCGTACAAAAGTTGTTAAACAAGATGAAGAAATCTCAGCGTTTTTAGGAATGAACTGTGAGATGTGTGGTTCAAATGAAAAAACCTTCATTGATTTAATGAATCATTTTCGTGATGTACACCGTGTCGATGGTTATATACGATGCTGTAAAAGAAAATTTACCAGACGAAAGAAATTGTACACTCATATTGAAAATCATAAAGACGCAAATAAATACAAATGTGAACAATGTGGTAAATCGTATTTGGATAAGGATTATTTTATTAGACATGTTAAACAACATGATCCTAATTCCAAACCATTTCAATGTGGTGAATGTCCAAAGCGATATGAATCTCAACGGCTGCTTCATATTCATACCCGTACCCACACCAATGAACCAAAACCGTTTATGTGCGACATATGCATAAAATGTTTCAATTCCAAGCACGGAGTCGTATCTCATATCTTATTGGTGCATACCCAACACTGTACAATTATTTGTGATGTTTGTGCGAAAACATTTAAAAGTCGTGTTCAACTGGATCAGCATTACATAAGCAACCATACGAATATTGTTCAACCGAAAATTCAATGTTCCATATGCGGATCCTGGCTATCCAATAAGTTAAGTTTACACAAACATGTTCGACGTTGTCACGAATCGAAAGAGGAAACGTGCACGATTTGTGATAAGAAATATCCGAATAAGGAGGCGCTTTGTaagcacatgcaatacTTGTCGGAAGATGATTCTCTTTCGAAAATCGTTTGTAAATTATGTTGGCGGACGACTGATGAATTCCATAAATTATACTGTAACGTCCAAGAATATATGGCCAATTTACAAGTAATCACGAAGGAGGATATAATTGTGAATTCCAATCAGGCAGATATTAAGGTGGAAGATTATCCAAATTTCGGCGATTATACGCCATACGGAAATATCATCATTGAAACGGATAAAGTAGATGATTTTTATCCTAATATCACTCTCGATACTATTTTTAAAACAGAAAATACATCTGAAGAAATTTATAAATCCGTTGCAACAAATGATGAAATTAACGCTGAAGATAAGAGTCAGACATTTAAATCAAAGAAATTGAAGATGAAAAAGACGAGAAACCAAGAAATATTATCGAAACGAACGGATGGTAAAAATGTATCTACCCAACGGAAACGTATTGAGGAAATGGATTCAATTATTGCAGACACCCTTGGAATAGTATGTGAAATATGTGGAATGACCACGGGGAATTTTACCAATCTAATGAAACATTATCGAGATAAACATAAAACTGATGGATTTATAAAATGTTGCGATCGATCATTTTCAAAAAGACATAAATTGTACAATCATATTCAAAATCATCGATGTCCGGATCGATTTAAATGTTATGTATGCGGAAAAAAATTCATTGATAAATTTTATTTCAATCGACACATTAAAAATCACGATCCATCATCGAAAACGTTTCAGTGTTCCGATTGTCCGAAACGATACGATTATCAGAAGCTGCTAGACCTGCATTACACCCAAACGCATTGTGATAAACCAAAACCATTCATTTGCGATTTATGTGATAAAGGTTTCCATTCAAAACATTCGATTGCTGCTCATTTGGTCGCTATGCATACGGAACGATCCCTATTTATATGTGATATTTGTGCTAAGATACCCGAACCGACAAACAAAAACGATGTATTACAAATCGTATGTACCCAGTGCTGGACCAAATTATTCGATTTTCACCGTTTCTATACGGATATCGAAGTAATACATGGTCGATGTCAGTTAGATTGTGTTAAAGTTGAGCTCGAACCACAATCCCAATCATTTGATATCCATACCAATGATATAAATGCTTTGAATGAATGTGATCGGGACGAATTGATTATGAAACCGATAAAAAATGAAACAACCACACCGAAAATCAAATGTACAAAGAAGAGAGTGGAGATAGAACGTACAGAGGATACAAAAAGCAAGAGAACAAGTAGGACGATCAGTTCAAAAACTAAAGAACGAAGAGAGAAAGATAAGGAGAAACAAAATGAATATTATCGCACCTTTTTCAATATGGACTGTGAATTGTGTGAAGAGAAATGTTACAATTTCGAGCAGAATCGGGACCACTATCAAACCATTCATAATCAACCGGGATATGTAACGTGTTGTTCGAGGAAGTTTACCAATCTACGGGCAATGAAAGTTCATATTGTTGAACATGTACAACCAAATGCATTAAAATGTGATTACTGTCAAAAGAGATATACTGTAAAGGCGCGATTACGAGATCACATCTTGACTCATGTTGAACCGAAAAATCGACAGTTTAAATGTGATAAATGTGAACGTACATTTATTAAGCAATTTAAATTAGCGGACCATTATAGATTGAAACATGCAAAGGATTCAGAGAAGATATACAAATGTGATTTGTGTGATAAACGATACGTGCTACAACGACTTCTCACAAATCATAAAACGTACGCGCATCAACCTAGAGGTTCCTTTATATGTGACGTTTGTGCTAGAGAATTTTCCAATTACAGCAATTATATGACACATAAAAAGTTGCTTCATGATAAGATGATGACACCGATTCAGTGTCAGGTTTGTGGTAAATGGTTAAAAAATCGTACCTGCCTAAAAGGCCATATGATCATTCACATTGATGGTGGCGAGAAGACGTGCGAACATTGTTTTAAAGTACTGAAAAATCGTCTATCATTACGGAAACATTGTAAAGAAGTACATTCTGAACGGCCTCTATACAAATGTACAATCTGCCCAAAAGAATATCGAAGAGAGATTAATTTGAAGgaacatatgtcttctcatactggtgcagttttatattcatgttcattttgtacgaaaactttcaattccagtgggaatatgtatagtcatcgaaaaaCAGCTCATCCAATTGAGTATCAATTAAGTAAGGATCAGCCAAAATCGAAAGCCGAAGATTTCCTAGAAATATTCGATTATAATGGAAAAAAATTACAGATTGCCGAAATTGTATCCCAACACTTACGGTTTAAAAAGAAGGCAGACTATGCAGAAGACATTATTTGCAAACAATGTTGGGGTCGAGTATCAGATTTCCATCAATTTTACGTTCGTATCGAAAAGGTTCATGAACGTTTAAAAATGGAAATGGATCAAAACGAATCCCATACGATCGAGAAATCATTTGATATGGTTCCGGAAGACAATCTTATTCCATTGGATGATTGGTCTCAACAATCGAACAGTGATAATGAATTTATAAAAATAGAGCCTGAAATTGAAATAGGGGACTATGGTCTGGTTTCAAAATCTAGCACCAGAAACGACAAGACTACGAATTGCAATCCGACTTATCAAGCCATCTTTAATATGGACTGTGAATTTTGTAATGAAAGATTTATAACATTCCGCCAAATCTGTAATCATTATCAAACCGTTCATAATGAAAAAGGTTTTCTAACATGTTGTGGGAAAAAATTTTACACACGACGATCGGTTACATATCATATGGCTAGTCACGTACAACCGAAAACATTAACGTGTGATTACTGTCAAAAAGAATTTCATATGAAATGTAAGTTACGTGATCATCTATTGACACACGTTGATCCCGAACATCGACCATACCGATGTGATCGATGCGATCGAACATTCGTTAAGCAATACAAATTAATTCAACATCAAAGGGTTCGGCATCCGGATGAGAATGAGAAGGTGTTTGGATGTGATCAATGTGATAAACGATTTGTCGTCAAATATCTACTGCAGAGCCATATAACGCAATCTCACGGTGCCAAGGACTCATTTATATGTGATGTGTGCGCACGGGGTTTCTCAATCCATGGCAATTACGTTGCCCATAAGAAACTTGTCCACGACCGAATACTACCACCGGTACAATGTAAAATATGCGCTGTATGGGTTTCGAATCGAAACAATCTAAAAACACATATGATTATCCATACCGATACGGAACAGACTTGTAAATTTTGCTTTAAAATCCTGAAAAATCGTCGATCATTACGTACTCACTGTTCCGTGGTACATTCACAACGGAAATTTATCTGCAATATATGTAGTAAAATCTTTCAACGTGCTTTAAATTTACAAgaacatatggcttcacatacgggcgctgttttatattcgtgtaaattttgttcaaaaccattcaattctagtgcaaatatgtataaacatcgaaaGGCAGCTCATCCGTATGAATATAAATTAATGAGGGAGCAGGAGTCTAGCGGTCCGAAGGGAACTGCTGGCCAAACAAAATCCAATACGAATTGA
Protein Sequence: MGPVNIICRLCQSKLDKGIEIFGKQGLKLSIASIVSKHFAVKVAEKDEQSNIVCKKCWKTTDQFHKLYCTVEKITAKKNVSIRVLETDIKTENSLDYVEYEYSVSYLSADSSTTNLKIENGPGGHYNKRTDQLNKLPSNTETRGIVNINSLDETKLQQPQRSNDDRKSNWRTKVVKQDEEISAFLGMNCEMCGSNEKTFIDLMNHFRDVHRVDGYIRCCKRKFTRRKKLYTHIENHKDANKYKCEQCGKSYLDKDYFIRHVKQHDPNSKPFQCGECPKRYESQRLLHIHTRTHTNEPKPFMCDICIKCFNSKHGVVSHILLVHTQHCTIICDVCAKTFKSRVQLDQHYISNHTNIVQPKIQCSICGSWLSNKLSLHKHVRRCHESKEETCTICDKKYPNKEALCKHMQYLSEDDSLSKIVCKLCWRTTDEFHKLYCNVQEYMANLQVITKEDIIVNSNQADIKVEDYPNFGDYTPYGNIIIETDKVDDFYPNITLDTIFKTENTSEEIYKSVATNDEINAEDKSQTFKSKKLKMKKTRNQEILSKRTDGKNVSTQRKRIEEMDSIIADTLGIVCEICGMTTGNFTNLMKHYRDKHKTDGFIKCCDRSFSKRHKLYNHIQNHRCPDRFKCYVCGKKFIDKFYFNRHIKNHDPSSKTFQCSDCPKRYDYQKLLDLHYTQTHCDKPKPFICDLCDKGFHSKHSIAAHLVAMHTERSLFICDICAKIPEPTNKNDVLQIVCTQCWTKLFDFHRFYTDIEVIHGRCQLDCVKVELEPQSQSFDIHTNDINALNECDRDELIMKPIKNETTTPKIKCTKKRVEIERTEDTKSKRTSRTISSKTKERREKDKEKQNEYYRTFFNMDCELCEEKCYNFEQNRDHYQTIHNQPGYVTCCSRKFTNLRAMKVHIVEHVQPNALKCDYCQKRYTVKARLRDHILTHVEPKNRQFKCDKCERTFIKQFKLADHYRLKHAKDSEKIYKCDLCDKRYVLQRLLTNHKTYAHQPRGSFICDVCAREFSNYSNYMTHKKLLHDKMMTPIQCQVCGKWLKNRTCLKGHMIIHIDGGEKTCEHCFKVLKNRLSLRKHCKEVHSERPLYKCTICPKEYRREINLKEHMSSHTGAVLYSCSFCTKTFNSSGNMYSHRKTAHPIEYQLSKDQPKSKAEDFLEIFDYNGKKLQIAEIVSQHLRFKKKADYAEDIICKQCWGRVSDFHQFYVRIEKVHERLKMEMDQNESHTIEKSFDMVPEDNLIPLDDWSQQSNSDNEFIKIEPEIEIGDYGLVSKSSTRNDKTTNCNPTYQAIFNMDCEFCNERFITFRQICNHYQTVHNEKGFLTCCGKKFYTRRSVTYHMASHVQPKTLTCDYCQKEFHMKCKLRDHLLTHVDPEHRPYRCDRCDRTFVKQYKLIQHQRVRHPDENEKVFGCDQCDKRFVVKYLLQSHITQSHGAKDSFICDVCARGFSIHGNYVAHKKLVHDRILPPVQCKICAVWVSNRNNLKTHMIIHTDTEQTCKFCFKILKNRRSLRTHCSVVHSQRKFICNICSKIFQRALNLQEHMASHTGAVLYSCKFCSKPFNSSANMYKHRKAAHPYEYKLMREQESSGPKGTAGQTKSNTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -