Snob003749.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010008151.1:6135-10841[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.15 5.4 7.8 2.7 2 23 208 230 207 230 0.92 2 20 0.16 5.6 7.7 0.5 6 23 239 256 239 256 0.97 3 20 2.4e-06 8.5e-05 22.9 0.3 2 23 263 284 262 284 0.97 4 20 1.8e-07 6.2e-06 26.5 0.8 1 23 291 314 291 314 0.95 5 20 9.4e-05 0.0033 17.9 0.1 1 23 321 344 321 344 0.96 6 20 0.00031 0.011 16.2 0.8 3 23 352 373 350 373 0.97 7 20 1.2 43 4.9 2.6 2 23 382 403 381 403 0.82 8 20 0.02 0.71 10.6 0.1 2 23 409 431 409 431 0.97 9 20 2e-05 0.00071 20.0 2.8 1 23 436 458 436 458 0.98 10 20 0.00096 0.034 14.7 1.6 1 23 464 487 464 487 0.95 11 20 0.092 3.2 8.5 0.8 2 23 665 687 664 687 0.95 12 20 0.11 4 8.2 0.2 6 23 696 713 696 713 0.97 13 20 5e-07 1.8e-05 25.0 1.3 2 23 720 741 719 741 0.97 14 20 3.1e-06 0.00011 22.5 0.3 2 23 749 771 748 771 0.96 15 20 0.00075 0.027 15.0 0.2 1 23 778 801 778 801 0.97 16 20 0.045 1.6 9.4 0.8 3 23 809 830 807 830 0.96 17 20 0.45 16 6.3 0.1 2 23 839 860 838 860 0.95 18 20 0.0026 0.093 13.3 0.1 2 23 866 888 866 888 0.97 19 20 3e-06 0.00011 22.6 0.8 1 23 893 915 893 915 0.98 20 20 0.0015 0.051 14.1 1.4 1 23 921 944 921 944 0.97
Sequence Information
- Coding Sequence
- ATGGGTAATAAGGAGCATATGTGTCAATTGTGTGGCAATAAACACAAAGCTGGTATAGAGATATTCAGCCCAAAAGGTGTTCAACTATCAATGAAATCAATACTTTACCAGCATTTTTCGCTTGAGTTTACCGAAACCGATGCAGAATCGAAAATAGTCTGCAAGAAATGTTGGAAAATCACTGATTCATTCCATCGACTGTACTGTCTAGTAAAAGATGTAGTTGCCGTTTTGAATAAGGACCAACAGCAATCAATACAATTTCCCCCAATCGATTCGACAGAACATAATGTAGATTCCATGGAACAATTAGATTTTATCGGTGTTGGCGTTGCAGTGAAATTAGAACCGGATGACGATAATCCATATGATGACGGAGTGCATAGTAGCCCAAACCCGACTGAAATAAAATCGGTTGTAGGGGTTAAGGATGAAAATGCTCAACAAACATACGATGAATTAGATAATGATCGTAAACCGAAATTAGAAGTAAAGACGGAACAATTACCGAAAAGACAATCAACGAAAAAAACAATTTACAATAAAACGATTAAACAATTTACACCGAAACAGTTAGCGGCAATTGAACAAGATAAGGAGATTAAAAATTCATTGGGTATCGTATGCGAATTGTGCGATAAACATTTCAAAACATTTACAATTTTGAATAAACATTTTGAGCGAAAGCATAAATCATTTGGTTATATTCGATGTTGTCAGCGAAAATATAGATCACGTTCATCACTGTACGATCATATTCAAGACCATAAAGATCCATTTCGTTTACAatgtccggtttgcgcgaaaaaatttatCGATAAGGCGAATCTGAATAAGCATATTAAAAGTCATGAACCCAATTCGGAGAAATACTACTGTCCGCATTGTCCGAAAACATTTGAAAGGCAATCGAATCTTAATTCGCACATTGAATGGATACATTCCGTTCGACCGAAATTGTTTATCTGCGACATATGTGGAAAAAATTTCGTATCTAGATCAACGATTGCCAGTCACATATTGAAGGTGCATGTTCGGGAGTACTCACAGATTTGTGATATTTGCGCTAAGACGTATAAAAGTAAAAAGCAACTGGATTCACATTATAGAACAATACATTTGGGCATCCAATCTCCAAAGATTCAGTGTACGATATGCGGCTCATGGCTATTAAATAAAGATAGTTTACGAAATCATATGCGTTATCATTATTCGAAAGAGGAAACATGTCCGATTTGTGGGAAAAAAGCACCGAATCGTAATGCGATTGGAAATCATATACGTAAAGTGCATAGTGGACTAGTATATTCGTGTACAATGTGCGAGAAAAAATTTAAGAAACAAAAATCGTTGACGGAACATATTTCCACTCATACCGGTTACAATCTATATCAATGTAAATTTTGTCCGATGGAATTTAATTACGAATCAAGTCTATATAAACATCGAAAGGATGTCCATTCAATCGAAATTGAAGAGGAACGGAGTCGGAAGTTTCCTAATTCCGAAACAGAAACGAAGATTGTATGTAAAAATTGTTGGAGAATTACCGATGAATTTCATCAGCTCTACTGTATGGTGAAAGATGAATTCACTGGAGAGAAGAGATTGTTCAGAAAGTATAAATCGAAAGCGAATCATGACAAAAAATCATCAATTCAATCACCAGCAAGTCCAAAACGTGAACAAAATGAACATTCCGTGGAACAGTCCGATTACATCGATACCGACGTCAAATTAGAATCGATGGTACCGTATGACGATTCACAATTTATAGCCGATGATCATTTATTTGATGACGATTTACATAGTCCGTTAGTAAAATCAGATCAATTACAATCGGAAATAGAAATTAAAGAAGAAAATTTGCAACAGAAAATCGAAGGAATTTTCGAGGATCTACCTGAATTAGACGTGCCGACAGATCGATTAACGTTTAAACGAATGCAGGCGATTGAACAGGATAAAGAGATTGAAAGTTCGTTAGGAATTGTATGCGAGTTGTGCAATAAAACGTTGATAACGTTCTTGGGTTTAAAGAAACATTTTCGACAGAAACATAATGTGATCGGTTACGTTAGGTGTTGTGAAAAAAAATATACATCACGATCATTACTTTACGATCATATACAAGATCATAAGAATCCAGTTCGTTTACAATGTCCGGTATGCGAGAAAACATTCATCGATCATGCTAATTTGAATAAACATATGAAACGTCACGATCCAACATTAAAAAAGATCCAGTGCCCGAATTGTCCGAAAATGTTTGAGAAGAAATCGAATCTTAATTCACATATCGAACGGGTACATTTTATTGGACCGAAATCATTTATTTGTGACATCTGCGAGAAAAGTTTCGTATCAAAATTAACAATCACCACGCACCTGTTAACCGTGCACGTTCAGAAGTATTCGCAGATTTGTGATATATGTGCAAAAACATATAAAAGTATAAAATTATTAGATTCTCATTATAAGAAAAAACATTTGGGTATCCAATTGCCAAAGGTTCAGTGTACCGTATGTGGTGCCTGGCTATCAGATAACAATATATTGAAAAAGCATATGCGGTATCATTATGCGAaagaggaaacatgtccgatttgtgggaaaaaggcaccgaatcgcaatgcaatgggaaatcatatgcgtaaagtgcatagcggacgaatatttccatgtaatatgtgcgataaaaaatttaaatcacaaatttcattaacggaacatatttctacgcataccggttacaatttatatcgatgttcctattgtccaatggaatttaagtacggaactagtctatataaacatcgtaaggttgtacatccgatcgaattggaagtggatcgaaatcgaaaaGTGTGCCCATCATTTACTCCAATTAAGAAAATCGACACTTATTGA
- Protein Sequence
- MGNKEHMCQLCGNKHKAGIEIFSPKGVQLSMKSILYQHFSLEFTETDAESKIVCKKCWKITDSFHRLYCLVKDVVAVLNKDQQQSIQFPPIDSTEHNVDSMEQLDFIGVGVAVKLEPDDDNPYDDGVHSSPNPTEIKSVVGVKDENAQQTYDELDNDRKPKLEVKTEQLPKRQSTKKTIYNKTIKQFTPKQLAAIEQDKEIKNSLGIVCELCDKHFKTFTILNKHFERKHKSFGYIRCCQRKYRSRSSLYDHIQDHKDPFRLQCPVCAKKFIDKANLNKHIKSHEPNSEKYYCPHCPKTFERQSNLNSHIEWIHSVRPKLFICDICGKNFVSRSTIASHILKVHVREYSQICDICAKTYKSKKQLDSHYRTIHLGIQSPKIQCTICGSWLLNKDSLRNHMRYHYSKEETCPICGKKAPNRNAIGNHIRKVHSGLVYSCTMCEKKFKKQKSLTEHISTHTGYNLYQCKFCPMEFNYESSLYKHRKDVHSIEIEEERSRKFPNSETETKIVCKNCWRITDEFHQLYCMVKDEFTGEKRLFRKYKSKANHDKKSSIQSPASPKREQNEHSVEQSDYIDTDVKLESMVPYDDSQFIADDHLFDDDLHSPLVKSDQLQSEIEIKEENLQQKIEGIFEDLPELDVPTDRLTFKRMQAIEQDKEIESSLGIVCELCNKTLITFLGLKKHFRQKHNVIGYVRCCEKKYTSRSLLYDHIQDHKNPVRLQCPVCEKTFIDHANLNKHMKRHDPTLKKIQCPNCPKMFEKKSNLNSHIERVHFIGPKSFICDICEKSFVSKLTITTHLLTVHVQKYSQICDICAKTYKSIKLLDSHYKKKHLGIQLPKVQCTVCGAWLSDNNILKKHMRYHYAKEETCPICGKKAPNRNAMGNHMRKVHSGRIFPCNMCDKKFKSQISLTEHISTHTGYNLYRCSYCPMEFKYGTSLYKHRKVVHPIELEVDRNRKVCPSFTPIKKIDTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -