Snob005853.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010013518.1:728-12046[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.54 19 6.0 1.6 2 23 200 222 199 222 0.93 2 35 4.7 1.7e+02 3.1 1.5 6 23 231 248 231 248 0.99 3 35 0.0076 0.27 11.9 7.7 1 23 254 276 254 276 0.99 4 35 4.1e-05 0.0015 19.0 3.7 1 23 283 306 283 306 0.96 5 35 0.38 14 6.5 0.3 1 23 313 336 313 336 0.82 6 35 0.00029 0.01 16.4 0.2 1 23 341 364 341 364 0.96 7 35 0.0022 0.079 13.6 0.9 1 23 372 395 372 395 0.97 8 35 0.0022 0.076 13.6 1.7 2 23 401 423 401 423 0.96 9 35 0.0081 0.28 11.8 0.7 3 23 615 636 614 636 0.97 10 35 0.00074 0.026 15.1 1.8 1 23 670 692 670 692 0.99 11 35 1.8e-05 0.00063 20.2 1.0 1 23 700 723 700 723 0.94 12 35 0.44 16 6.3 3.2 1 23 730 753 730 753 0.96 13 35 0.002 0.069 13.7 2.0 2 23 760 781 759 782 0.93 14 35 0.00019 0.0068 16.9 0.9 1 23 789 811 789 811 0.97 15 35 0.0011 0.038 14.5 0.4 2 23 817 839 817 839 0.96 16 35 0.26 9.2 7.1 0.2 3 23 1003 1024 1001 1024 0.94 17 35 0.3 10 6.9 2.2 1 23 1079 1102 1079 1102 0.96 18 35 0.23 8.2 7.2 2.3 2 23 1109 1130 1108 1131 0.91 19 35 4.7e-05 0.0017 18.8 1.7 1 23 1138 1160 1138 1160 0.98 20 35 0.023 0.8 10.4 2.3 2 21 1166 1185 1166 1188 0.95 21 35 0.025 0.87 10.3 0.3 2 23 1382 1404 1381 1404 0.96 22 35 7.7e-05 0.0027 18.2 3.0 1 23 1436 1458 1436 1458 0.99 23 35 0.051 1.8 9.3 1.2 1 23 1465 1488 1465 1488 0.94 24 35 0.015 0.52 11.0 0.2 1 21 1495 1515 1495 1518 0.81 25 35 0.00073 0.026 15.1 0.3 3 23 1526 1547 1524 1547 0.95 26 35 1.9 66 4.4 0.7 2 23 1556 1577 1556 1577 0.93 27 35 0.063 2.2 9.0 0.4 3 23 1750 1771 1748 1771 0.97 28 35 0.0009 0.032 14.8 4.2 1 23 1803 1825 1803 1825 0.99 29 35 0.00085 0.03 14.9 1.6 1 23 1832 1855 1832 1855 0.96 30 35 0.0011 0.038 14.5 0.1 1 23 1862 1885 1862 1885 0.94 31 35 7.9e-05 0.0028 18.1 0.4 1 23 1891 1914 1891 1914 0.96 32 35 0.12 4.2 8.1 1.8 2 23 1923 1944 1922 1944 0.97 33 35 0.0012 0.042 14.4 1.1 2 23 1950 1972 1950 1972 0.95 34 35 0.00017 0.006 17.1 3.6 1 23 1977 1999 1977 1999 0.98 35 35 0.001 0.035 14.6 3.2 1 23 2005 2028 2005 2028 0.98
Sequence Information
- Coding Sequence
- ATGAGTTCGGATAAATGTCGATTGTGTGGAGGACAATCCCGGAATACATTGGACATTTTTGGTCCGGAAGGCATTGAATTATCTATAGAAAATGTTTTATTACGACATTTTAAATTCCAGCTATCGAAAGATGATGAATTTTCAAAAATTGTATGCATGAAATGTTGGCGGGTTACAGATCAATTCCATAAATTGTATTGTACCGTTGAAGCGTACACAGCAAAATTAACGGATGTCTGTAGAGGACTGGTGAAGAAGGATGTCGAAGATGAACAAGAAATTAAAGAAGAAGATCATTTCATCGATACAGAACCAAATAATTGTTGCTATACCTCGACAATCGAAATACCGGATGCGGTTCAATTGGATTCATCTATTATAGATACAATAAAGAGTGAGGATGAAGCTTCTGATTTAAAAGATAACATTTCGTCCGAGTCTGATAATGAGGGGAAACCACCACCAACTTCAATGCCCCGAAAACGAAAACTAAATCAATTACCGCAAGTTTCTAAAAAGGATGGACTATCAGAGAATGTATCCAAATCACAAATGGATAAAGTTATCGATAAAGAAATATCAGAATGGTTTGAATTAAGTTGTGATATTTGTAAATCAACCACCGAAACATTTACGGAATTGAAACGACATTTTCGTGATAAACATGAAGGTACTGGTTATATTAAATGTTGTGATCGTAAATTTACAGAGAGATGTCGATTATACGAACATATACAAAAACATAAATGTCCGGATCTCTTCAAGTGTACGGTTTGCGGAAAGCTATGTGAGGATAAACATAATTATAAACGTCATTTTAAAACGCATAGTACAATGGGACAACCGTACCTGTGTAATCAATGTCCTAAACGATATAAATCTCAAGGACATTTAAACAAACATTTACGACGAAATCACAGTTCAACGCCGGAGCAATATTTCTGTGATGTTTGTAATAAAAGATTCGCTGGAAAACAAGCACTTGGTTTCCATTTACTTCGAATACACGTTGGTCATACATTTGTATGCGATGTGTGCGGAAAGGTATTCAAAGCACTAACTGAATTGAATGCGCATAATAAAAAAACACATCTGGGTTATGTGTCACCGAAATTTAATTGTACAATTTGTGGGATGTGGCTTTCAAATCGCAAAAATTTGCAACGACATACTAGACGTATTCATGAGGGTACAAAGGAAAAATGTGATATCTGTGATAAGGAATGTCCAAATAAAACGTCTCTTGCGCAACATAAACGATATGCTCATAGTGGTTTATCATTTCCCTGTAATATATGCAAAGATAGTAAATGTCGTTTGTGTAATAAGAGCAGTAAGATCGGGATTGGAATTTTTACTAAAGAGGGGATGCGATTAGAGATTCCCTCGATTTTATCCGAACATTTTAAAATACAACCATCCAAAGATGATCCATTCAGAATTTGCAAAAGATGCTGGGAAATTATTGATCAATTCCACATGCTGTACTGCCTGGTATCAGAAATTGAGTCAGATAATCAGAAATTGGTTGAAAAGTTGAACAAAATTGAATATTTAGTTTCATCAGAAATTAAAGTTGAAGAAAATCAAAACAAAATCGAACTCGGAGAGTACCAAATTGATACGGAAGTGTTTAATACAGATCCTTTGCTTAAAATAAAAGATAACTGTGAGCAAAATGATGTTACAGGTAATGAGAATGGGAGGATTCCAATAAAGGTTGAGAAAAATAATGTTAGTGAATCACCCCGATTAAAAGATAGACGAGGGAAGAATCGAATTTCAAAAAACGTATCTGGGGAAGAACAGGATATTTTAATCGGAAAGTTTCTAACAGCAATCTGTGATTTATGCGGAATAACAACGGAAACATTTACCAAGCTAAGGAAACATTATCGAACCGAACATAAAACTAGTGGTTATTTGAAATGTTGCAATCGAAAAATTTTCAGACGGATCGGTTTATATGAGCATCTACGAAACCACGAACAACCAGATAAAAATAATTTTCGCTGTACAACATGCGGCAAAATTTATCTAGACAAAGACTATTTTGTTCGACATTTACGAACTCATAATCTTGATCCAACAAATGATTTTAAATGCAACATATGTGACCGACGATACAGTTCGCAACGAGCTTTAACCAGACATATTGAAGATAAGCACAGTGGTACAACAAAATCATTCATTTGCGATATATGTAACAAATGCATGCATACTAAGACTTCAATTACCCAACACATATTATCGATACATGTAGGCCTATTAAAATGTATATGCGATATATGCGGCAAAGAATTTAATCTACGTGGTGCATTAACATCCCATTACGAGAGACATCATTTGGGATTTACGAAAAAATTCATATGTAAAATATGTGGGAAAGTGCTCGCAAGCAATAAAAGTCTTCTCCTTCATATGCATAGACATGAAATAACGAAAGAAACATGTCAAACTTGTGGTAAAATGTATCCGCATGAAGATGCACTTCTCAATCACATAAAATATGTGCATACCAGTAAAGGGTTTCCCTGCAATTTGTGTGATAAGCCATCCAAAGATGATTCATTCTCGAAGCGAATTTGCAAAAGATGCTGGGACATTACTGATCAATTCCACAAACTGTACTGTCTGGCATCGGAAATTGAGTCACATAATCAGAAATTAGTTGAAAAGTTGAACGAAACGAAAGATACAGTTTTAACGGATATAGAAATTAAAGATGAAGAAAGTCAAAATAAAATGGAAATCGGAGAGTATCAAATTGATACGGAAGTGTTTCATGAAGATCCTCTACTTAAAATAGAAGATAGTTGTGAAGAAAATGGTGATACGGGTCATGAGAATGAGACGAAAACAATAAAGATAGAGATCGAAAAAGATATAGAAACACCTAGTAAAATCATACCCCGATTAAAAACTAGAAGAGGTAGGAATCGAATTTCGAACAAAGTGTCTGGGGAAGAACAGGATAATTTAATCGGAAAGTTTCTAAAAACAATATGTGATCTATGTGGAGTATCAACGGAAACATTTACCGAGCTAAGCAAACATTTCCGTGCCGAACATAAAACTAGTGGTTATTTGAAATGTTGCAATCGGAAGATTTTCGGGAGGCTACGTTTATATGAGCATCTACAAAATCATGAACAACCCGAGAAAAATAAGTACAGTTCGCAAAGAGTTTTAACCGGACATATTGACCATAAGCACAATGGTACTCCAAAATCATTCGTTTGCGATATATGTAACAAATGCATGCATTCAAAAACTGCTATTACCCAACACATACTATCCATACATGTGGGTTTATTAAAATGTATATGCGATATATGCGGTAAGGAATTTAATCTACGAGGTGCATTAAATTTCCATTACGAAAAACATCATTTGGGAATTACGAAAAAATTTACATGTAAAATATGTGGGATAGTGCTCGCTAGCAATAAGAATCTTTTCCGTCATATGCATAGACATGAATTAACGAAAGAAACATGTCAAACTTGTGGTAAAGTTTATCCGCATAAACTTGCACTTCTCAATCACATGAAATGTGTGCATACCAGTAAAGGGTTTCCCtgcaaattgtgtgataagTCATCGGAGGACGATCCATTATCGAAGATGATATGCAAGAAATGTTGGCGAATAACAGATCAGTTCCATAAACTGTACTGTGATGTGGAAAAAAATCGTATTAAATATGAGGAAATCTCCAAATTTTCAGAGTTAGGGGAAGCAACGGAAACACAAAGCTTTGATCATATTAAGAAGTCAGAATTAGACGAACGAACGGACACGCCGTCATTTAAACATATTAAAGAGGAGGAATCGGTTATTGATGATTTCAATCCATTTATTGAAAATACGGTTTCATCTGACGGCAAAGATTCCGTTCTTAAAACCGAAGAAAAGTCGGAAGAAATGGAATATACGAACAATTATATCACAATTGATATGTTATCGACCGAACAGCTAAATATGGAAACGGGTGAATCTGTTCGTAAAAAAGATAAAGTGAATTCAAAAAAGAAAACTAAATCCTCCATCGCGAAAAATACAATTAAATCCAAGACAAAATCAACTCTCCAATTACAAGTAATGCAACAGGATAAGGAAATATGCGATTTTTTGGGAATGGAATGTGAAATTTGTAATGTGGCAACAAAAACGTTTACGGATTTAATGAATCATTACCGGAACGAGCATAGAATTGAAGGATACATTAAATGTTGCAATCGGAAATATTTACGGAGGAATAAATTGCATAAACACATACAAAATCATAGATTTCCAGATCGATATAAATGTACTTTTTGTGGGAAATCGTATCTCGACAAAGACTATTATCAACGCCATATACGAACTCATGATCCTTCAACGAAAACATTTCAATGTTTACAATGCCCGAAGCGATTCGATTCACAAAAACGTTTAGACTTACATTTTCTCCGGATACATAGTACGGCACCAAGACCGTTTGTATGTGATATATGCCAAAAAAGTTTCTCTACGAAACGTATCGTTGCCACCCATTTATTGGCAATGCATGCTCAACAATTTTCATCCATTTGTGACACGTGTGGGAAAATATTTAAAAGCCGCGTCCAACTTGACATCCATTATAAAATTAATCATTCGGGAATTCAAATTCCCAGAGAACAATGTACATTGTGTAGTGCATGGCTTTCGGATAAAAAAAGTCTTAAGAGTCATATGGGTAGACATGCAGCCGCACAAGCCTCTTTGGAGCAGGACACCCATTCGAAAGTGGTTTGCAAGAAATGTTGGCGAATTACAGATCAATTTCATAAACTTTACTGTCAAGTTGAACTAAATAATACCGAACAATTCGATGTGACCGATCCCATAAATAAAGAGGCGACCGAAATCGTTGTTACACCGTCCCTAGATAATATTAAGGAAGAATCGTTTCTGAACGAATCATCCAGTCAATTTAATTACAATGATTCAACATTTGACGATAAAATTTCGATTTTTAAAACGGAGGAGGACGACAATGTTGATTTCCCAAGTACATCCGTCCTTGAAGCAATGTTTGTCAAATCAAATGATGATCAGTGTGCTGGAAATGTAAGCAAGAAAACAAAATCGAAATCAGAGTCTCAGAGGACTCGAGAGAGCCTATCGAAAACAATTAATAAATATCGGACAGACAAATCTGCAGTAAAATTAAATATCATTGAACAGGACAAGGAAATTATAAAATTTTTGGGGATATTTTGTGAGATATGTGATATTACAATGAATACATTTACCAGTTTAATGAATCATTACCGGACGGAACATAGAATCGATGGATATTTGAAATGTTGTAATCGGAAATTCTTACGTAGACATAGATTATATAAACATATACAAAACCATGGTTGTCCAGATCGATATAAATGTGATACATGCGGAAAATCATATCTCGATAAAGACTACTACCACCGTCATATAAGAAGACATGATCCGTCAACAAAATCATTCCAATGCACGAAATGTCCGAAACGGTTCGATTCCCAAAAGTATTTAGATTTACATGTTCTTCGAACCCACAGTGACGGTCCGAAACCGTTTATTTGCGATATATGCAATAAAGGATTTATCACAAAATATTCCGTTGCCACCCATTTGATGGCCATGCATACGGAACATTACGCCTTCATTTGTGACAACTGTGGAAAAGTGTTTAAAAGTCGTGTACAATTAGACATTCACTATAATAGTAATCATATGGGGATCGTAATCCCGAAAGTTCAATGTACATTGTGCGGCGCTTGGTTGTCCAACAAGAAATGTTTAAAAAGTCATATACGGAGACATGAAGCGGTTAAGGAAGTGTGTACAACGTGTGGAAAAGTTTGTCCAAATAGAGATGCTCTCTCGAAACATTTTCGATACGCGCACAGTGTAGTATCTTATCGATGCCATATGTGCGATAAGACATGTAAATCTCAAATTGCATTAAAGGAGCACATCAGTATCCATACAGGCTTTAGCTTATATAAGTGTTCGTACTGCTCAATGGAATTTAAATCAAACGCTAATATGTATAAGCATCGAAAGAGTTCCCATCCGATCGAATGGCAACAGGATCGTGGAAAACGTTTAAATATATATAATGTCTGA
- Protein Sequence
- MSSDKCRLCGGQSRNTLDIFGPEGIELSIENVLLRHFKFQLSKDDEFSKIVCMKCWRVTDQFHKLYCTVEAYTAKLTDVCRGLVKKDVEDEQEIKEEDHFIDTEPNNCCYTSTIEIPDAVQLDSSIIDTIKSEDEASDLKDNISSESDNEGKPPPTSMPRKRKLNQLPQVSKKDGLSENVSKSQMDKVIDKEISEWFELSCDICKSTTETFTELKRHFRDKHEGTGYIKCCDRKFTERCRLYEHIQKHKCPDLFKCTVCGKLCEDKHNYKRHFKTHSTMGQPYLCNQCPKRYKSQGHLNKHLRRNHSSTPEQYFCDVCNKRFAGKQALGFHLLRIHVGHTFVCDVCGKVFKALTELNAHNKKTHLGYVSPKFNCTICGMWLSNRKNLQRHTRRIHEGTKEKCDICDKECPNKTSLAQHKRYAHSGLSFPCNICKDSKCRLCNKSSKIGIGIFTKEGMRLEIPSILSEHFKIQPSKDDPFRICKRCWEIIDQFHMLYCLVSEIESDNQKLVEKLNKIEYLVSSEIKVEENQNKIELGEYQIDTEVFNTDPLLKIKDNCEQNDVTGNENGRIPIKVEKNNVSESPRLKDRRGKNRISKNVSGEEQDILIGKFLTAICDLCGITTETFTKLRKHYRTEHKTSGYLKCCNRKIFRRIGLYEHLRNHEQPDKNNFRCTTCGKIYLDKDYFVRHLRTHNLDPTNDFKCNICDRRYSSQRALTRHIEDKHSGTTKSFICDICNKCMHTKTSITQHILSIHVGLLKCICDICGKEFNLRGALTSHYERHHLGFTKKFICKICGKVLASNKSLLLHMHRHEITKETCQTCGKMYPHEDALLNHIKYVHTSKGFPCNLCDKPSKDDSFSKRICKRCWDITDQFHKLYCLASEIESHNQKLVEKLNETKDTVLTDIEIKDEESQNKMEIGEYQIDTEVFHEDPLLKIEDSCEENGDTGHENETKTIKIEIEKDIETPSKIIPRLKTRRGRNRISNKVSGEEQDNLIGKFLKTICDLCGVSTETFTELSKHFRAEHKTSGYLKCCNRKIFGRLRLYEHLQNHEQPEKNKYSSQRVLTGHIDHKHNGTPKSFVCDICNKCMHSKTAITQHILSIHVGLLKCICDICGKEFNLRGALNFHYEKHHLGITKKFTCKICGIVLASNKNLFRHMHRHELTKETCQTCGKVYPHKLALLNHMKCVHTSKGFPCKLCDKSSEDDPLSKMICKKCWRITDQFHKLYCDVEKNRIKYEEISKFSELGEATETQSFDHIKKSELDERTDTPSFKHIKEEESVIDDFNPFIENTVSSDGKDSVLKTEEKSEEMEYTNNYITIDMLSTEQLNMETGESVRKKDKVNSKKKTKSSIAKNTIKSKTKSTLQLQVMQQDKEICDFLGMECEICNVATKTFTDLMNHYRNEHRIEGYIKCCNRKYLRRNKLHKHIQNHRFPDRYKCTFCGKSYLDKDYYQRHIRTHDPSTKTFQCLQCPKRFDSQKRLDLHFLRIHSTAPRPFVCDICQKSFSTKRIVATHLLAMHAQQFSSICDTCGKIFKSRVQLDIHYKINHSGIQIPREQCTLCSAWLSDKKSLKSHMGRHAAAQASLEQDTHSKVVCKKCWRITDQFHKLYCQVELNNTEQFDVTDPINKEATEIVVTPSLDNIKEESFLNESSSQFNYNDSTFDDKISIFKTEEDDNVDFPSTSVLEAMFVKSNDDQCAGNVSKKTKSKSESQRTRESLSKTINKYRTDKSAVKLNIIEQDKEIIKFLGIFCEICDITMNTFTSLMNHYRTEHRIDGYLKCCNRKFLRRHRLYKHIQNHGCPDRYKCDTCGKSYLDKDYYHRHIRRHDPSTKSFQCTKCPKRFDSQKYLDLHVLRTHSDGPKPFICDICNKGFITKYSVATHLMAMHTEHYAFICDNCGKVFKSRVQLDIHYNSNHMGIVIPKVQCTLCGAWLSNKKCLKSHIRRHEAVKEVCTTCGKVCPNRDALSKHFRYAHSVVSYRCHMCDKTCKSQIALKEHISIHTGFSLYKCSYCSMEFKSNANMYKHRKSSHPIEWQQDRGKRLNIYNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -