Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.18 2.9e+02 1.7 0.5 14 43 33 59 27 60 0.76

2 10 0.26 4.1e+02 1.2 0.5 20 40 66 83 65 86 0.81

3 10 7.1e-06 0.011 15.8 2.1 1 41 76 113 76 116 0.92

4 10 0.0052 8.3 6.6 0.7 15 44 119 145 114 145 0.90

5 10 0.00011 0.17 12.0 1.3 4 41 142 172 141 178 0.85

6 10 0.011 17 5.6 1.5 3 27 166 190 165 204 0.90

7 10 0.002 3.1 8.0 1.1 15 40 209 231 197 236 0.77

8 10 0.0086 14 5.9 4.6 18 44 239 262 228 262 0.90

9 10 0.016 26 5.0 1.3 17 38 266 288 263 289 0.78

10 10 0.0052 8.4 6.6 2.2 15 35 292 309 283 318 0.69

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.18	2.9e+02	1.7	0.5	14	43	33	59	27	60	0.76
2	10	0.26	4.1e+02	1.2	0.5	20	40	66	83	65	86	0.81
3	10	7.1e-06	0.011	15.8	2.1	1	41	76	113	76	116	0.92
4	10	0.0052	8.3	6.6	0.7	15	44	119	145	114	145	0.90
5	10	0.00011	0.17	12.0	1.3	4	41	142	172	141	178	0.85
6	10	0.011	17	5.6	1.5	3	27	166	190	165	204	0.90
7	10	0.002	3.1	8.0	1.1	15	40	209	231	197	236	0.77
8	10	0.0086	14	5.9	4.6	18	44	239	262	228	262	0.90
9	10	0.016	26	5.0	1.3	17	38	266	288	263	289	0.78
10	10	0.0052	8.4	6.6	2.2	15	35	292	309	283	318	0.69

Coding Sequence: GTATCAACGCCTATACCGGAAAAGCCAAGTGAACAAACAAAACAATTAACAGCAAAAGAGTTGGAAAGAATTGAACAAGATAAAGAGATTCAAATTTCATTGGCAATTGTATGTGAATTGTGTGACACAACGTGTAGCACATTTACGGAATTGCGAGAGCATTACAAAAAGGAACATAAAGTCGCTGGTTACATTAGGTGCTGTGGTCGAAAATATAAATATCAATCGGAATTATATGAACATTTAAGAGATCATAAAATTCCAGTTCAACTACGACAATGTTCGATATGTGAAAAAACATTTACCAACAGTAATAATCTGAAAATACATATGAAACGTCATGATCCAACGTTTAAAAAGATCCAATGTCTGAAATGTCCAAAATTATTTTCAACTAAATCATATCTCAAAATACACATTGAATGGAAGCATCCGAACAGACCAAAATCATTTGTATGTGATATTTGTGGGAAGGGCTTCAACTCGAAATTAAGTGTTAAATGTCATTTGCAAGCTGTGCACGTAAAAAGGAATTCACGTATTTGTGATATGTGTGGAAAATTATTCACGACTGAAAAGATATTAGAAGAACATTATAAGATACAACATTTAGGTATCCGATTGCCAAAGGTTCAATGTAACATATGTGGAAGCTGGCTATCACATAAAAGCGATTTAGGAAAACATATGCGCAATCATTATGTGAATGAGGAAACGTGTGGGATTTGTGGGAAAAAAGCTCCAAATCGCAGTGCATTGCATAGCCATATGAAAAGAGTGCATAGTGGGAATATATTTTCGTGCACAATGTGTGAGAAAAAATTTAAAAGGCAAAAATATTTAACGGAACACTTTTCAACACATACCGGCTTTAATTTATATAAATGTAAATATTGTCCAAAGGAATTTAATTACGAATCTAGTTTATATAAGCATCGGAAGGATATGCATTCAATTGAAATTGAAGAAGATGTGCGTCAAAATGTATTTACACCATTTACTCCACTTAAGAAAATGAACGTTTAA
Protein Sequence: VSTPIPEKPSEQTKQLTAKELERIEQDKEIQISLAIVCELCDTTCSTFTELREHYKKEHKVAGYIRCCGRKYKYQSELYEHLRDHKIPVQLRQCSICEKTFTNSNNLKIHMKRHDPTFKKIQCLKCPKLFSTKSYLKIHIEWKHPNRPKSFVCDICGKGFNSKLSVKCHLQAVHVKRNSRICDMCGKLFTTEKILEEHYKIQHLGIRLPKVQCNICGSWLSHKSDLGKHMRNHYVNEETCGICGKKAPNRSALHSHMKRVHSGNIFSCTMCEKKFKRQKYLTEHFSTHTGFNLYKCKYCPKEFNYESSLYKHRKDMHSIEIEEDVRQNVFTPFTPLKKMNV

Sequence clustering based on sequence similarity using MMseqs2