Snob000475.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- lola
- Assembly
- GCA_027564815.1
- Location
- JANTOP010041224.1:17275-19575[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-13 2.2e-10 40.1 0.0 1 44 443 486 443 487 0.93 2 2 0.21 3.3e+02 1.2 1.0 4 18 580 593 579 595 0.93
Sequence Information
- Coding Sequence
- ATGGGCGGTGGAAATGAAGGGCAAACGTATTGTTTGCGATGGAACAGCCACAAATCGAATTTGGTGGAGATTTTGGATGTTCTGAGTCGGAAGGAGTGTTACGTCGACTGTACGATCTACGTTGACGATCAGATCCAATTTAAGGCGCATCGTGTTATATTGGCCGCCAATTCCCCCTATTTCCAATCGATTCTTCAAGATGTGCCCATGGATCATTGTAGCATCCTTTTCCCGGGGGTGCAAGCGTTCGAAATGCGTGCCCTCCTCGAATACATGTACACCGGTGAGGTGAATGTGACCCAATCCCAAATACCGCGCATCATGAAAATCGCTGAACAGCTTGAGGTGAAGGGACTGTTCGATATGACCGATCTCCGGGATCGGTTCGATAAAATGGAAACCAGTCAACATTATACGCAAAGCAGTTTATTGAATAGTAAAACGGCGACAACGATCGGTCATCATTTCAACCATCACTTACATCATTTGGGACACATACCGGTCTCATCACCAAATCCACATCTCCACCGAACGAGCCATACGTCCATCGATCAACCAACCCATCAACAATCGTCACCAATCATTTCGACATCAACGAATGTTGCGTCGGCCCAAAGTAGTTCATCCCCACCTTATAATTACAAATCCCCCTATACAAGTATATTGAACTCAAGGACCCAGCTACcaacgacaacgggatcagcagcagctgctgctgcggcagccgctgccgctgcagctgcggctgttgcaacaacaataccgaccggtcagtggtcgactcttacccaactaccgtcaaccatTCATCATGGTAGCCAATCCCAATCCCAATTACATAGCGGACGGTTAAGTAGCGGTAGCAATGGGAATGGGAACTCGTCATACGATCCCGTACCAAGTAAAAATCCCGCTGATTCAAATCCGTTGAAACGGAAAAAGTTATCAGCCATTTCAAGTATGTTGTTGTCCCGTGACACGCCGATCCTACGGAACGTACTCGCCCAGTCAGCATCCACAGCTGCTGATTCATCTCAAGCGGTGCCACTAACCGGTTCGCCATCAATTAAAATTGAAAATCTACCGCCAACTGGTACCAGTTCTACGTTATCAATTGATAAATTAAGTCAACATTCAAATGGAACGGAATACTTAGATAAGAAGATTAAGTATGAAGAACCTCAATCCCCTTACACCGATAAATCGTTCGAAGATGATAGTTTCGATGCAGCGGCCCCATTTCCTGGCGCTTCAATGTCTGGTGATCCCCGATTGGCATCGTACCCACCGCAACAGAAACCGGAATGGAAGCGTTACAAACAATATACGCGAGCGGATATTTTAGCGGCAATTGATTGTGTCCGAAATGGAATGAGCGCTTTACAAGCGGCTCGACAGTACGGCGTTCCATCCCGGACGTTATATGATAAAGTGAAGAAATTAGGTATAACAACGAATCGGCCGACAAACCGAACGCCGAAACGATCACCAAGCAACGGAAGTAGTCAGTCATTTCTTCAGATGGGTGGTGGGCAGTTTGGTTTAGAACATTTGTCACCACCACAAATGGGAGCGTCGGCACCGAACAGTAACGAACAGTTGGATATAAAATTTGAACCGGATGGTGGTGGTATGCCGGCACATCGTGCAGCTGCCCTACTAGATGCCAATTTCCTGCAACAAGCGTTAGAATCACGTGGTGCGGATTATGCTGGTCGGGAAGCATTACATGCAATGGCACTGGCTGCTGCTGCTCATGCTGCTGTTAATGGGATGTCATCAACCGATCGATCACCACCAACCCATCGATCAATGAACCGATCTCCGAGCCCATCCATTTCAATGCGATATGCGGCCGCAGCTGCTGCTGCTGCTGCCCGACGCCAATCATCACCATCACCGCCGCACAGTGATTCGAAAATGAATCATCATCAGTTGACGTCCACCCATCATATGGATGTGGATGAGAATCGTGAAACGACACCGATCAGTCATGAGGATGAGTATCGCGTTGAAGATTTATCGATGGGTAAAAAATCGGCTTCGCCACCAAATCATCCGAACGATCGAACAACACCAACGCCACCTATCAGTCGACCGTCATCCGGACAACAGCATGGTGTCATTGTACCACCGATGACAATGTTAACGTCACCGTCCACCACACATATGGATGAGATTAATTTAACGTTGAAGCGGGAAATTAATGTTTCCGATGACGTAATTCATAATTGA
- Protein Sequence
- MGGGNEGQTYCLRWNSHKSNLVEILDVLSRKECYVDCTIYVDDQIQFKAHRVILAANSPYFQSILQDVPMDHCSILFPGVQAFEMRALLEYMYTGEVNVTQSQIPRIMKIAEQLEVKGLFDMTDLRDRFDKMETSQHYTQSSLLNSKTATTIGHHFNHHLHHLGHIPVSSPNPHLHRTSHTSIDQPTHQQSSPIISTSTNVASAQSSSSPPYNYKSPYTSILNSRTQLPTTTGSAAAAAAAAAAAAAAAVATTIPTGQWSTLTQLPSTIHHGSQSQSQLHSGRLSSGSNGNGNSSYDPVPSKNPADSNPLKRKKLSAISSMLLSRDTPILRNVLAQSASTAADSSQAVPLTGSPSIKIENLPPTGTSSTLSIDKLSQHSNGTEYLDKKIKYEEPQSPYTDKSFEDDSFDAAAPFPGASMSGDPRLASYPPQQKPEWKRYKQYTRADILAAIDCVRNGMSALQAARQYGVPSRTLYDKVKKLGITTNRPTNRTPKRSPSNGSSQSFLQMGGGQFGLEHLSPPQMGASAPNSNEQLDIKFEPDGGGMPAHRAAALLDANFLQQALESRGADYAGREALHAMALAAAAHAAVNGMSSTDRSPPTHRSMNRSPSPSISMRYAAAAAAAAARRQSSPSPPHSDSKMNHHQLTSTHHMDVDENRETTPISHEDEYRVEDLSMGKKSASPPNHPNDRTTPTPPISRPSSGQQHGVIVPPMTMLTSPSTTHMDEINLTLKREINVSDDVIHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01383734;
- 90% Identity
- iTF_01383734;
- 80% Identity
- iTF_01383734;