Snob008959.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- bab1
- Assembly
- GCA_027564815.1
- Location
- JANTOP010080848.1:3179-4386[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-16 5.9e-13 48.4 0.0 1 43 48 91 48 93 0.95 2 2 5.2 8.4e+03 -3.3 2.9 6 23 188 207 186 209 0.69
Sequence Information
- Coding Sequence
- TTGACAACTTTCCTCCACCATTTTCTATTTACAGACAGTTACCAGTACCAATTGCAGTCGATGTGGCAAAAATGTTGGAACACCAACCAGAATCTGATCCATCATTTACGATTTCGTGAACGGGGACCTCTGAAATCATGGCGACCTGAAACGATGGCCGAAGCTATATGTAGCGTACTAAAAGATGGGTTATCATTATCCCAAGCCGCCCGTAAATATGACATCCCTTATCCAACGTTTGTGTTATACGCAAATCGCGTCCACAATATGTTGGGACCATCGATTGACGGTGGTCCGGATTTACGGCCGAAAGGTCGTGGGCGACCGCAACGGATACTGTTAGGGATGTGGCCTGATGATCATATAAAAGGGGTGATAAAAACCGTTGTTTTCCGTGATGCAAAGGAGTTTAAAGATGAAGCGATGCATTTAGCGGCATATGGAAGTCATTCGCCGGTTTATCCGTTTCAAGAGGGACAAATGAATTTTCCGGGTGGCAGCACGAACGGATTAGGTTCACAGCCCCCTACATCTGGTTCGGAATCATTATCCCCAGAGGCGGCCGCAGCTGTAGCTGCTGTCGTCGGACTACGTCAACAGATGCAAATGGCTGCCGCAGCTCACCATCAATCTGAATCCGCTTACATGTCCGGTGGTCGTGACGGTTCATCAAATCGTCCCTCCAAACTTAATTCACCGTCATCAACCGTACCCCGGCTCGGATCACCATCCAGTTTAAATAATTTGATGCATACCATCCCGGGTATACCCGGTCTACATATAATACCGGGCGTTGGACCGGCAACCAATCAATCTAGTCACGGTGGTCTATCAATAACGCCTGCCCATCAAACGATCGGCCGCAGTCCAATATCACCCGCTCATTCGGCCCACGATTTACGAATGACAACACCGGATGACGATCACTCATCGATCGATCTACCATTTGACGGTGTCAATTTATCGGTCGGCGTTAGCGGTGTACCATATAAATCAAGACCGTTCTCTTCGTCACGCACCGAACATGCTTTCCAGGATGATCTGTCCGAATTCGGGATGATCGGTCAACGATCATGCCCGTCCCGGTATAAGGAACCGGTTGATGGTATTAAAATTGAGCCGGGAACGGACTGCCGTACGGAGTGA
- Protein Sequence
- LTTFLHHFLFTDSYQYQLQSMWQKCWNTNQNLIHHLRFRERGPLKSWRPETMAEAICSVLKDGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGMWPDDHIKGVIKTVVFRDAKEFKDEAMHLAAYGSHSPVYPFQEGQMNFPGGSTNGLGSQPPTSGSESLSPEAAAAVAAVVGLRQQMQMAAAAHHQSESAYMSGGRDGSSNRPSKLNSPSSTVPRLGSPSSLNNLMHTIPGIPGLHIIPGVGPATNQSSHGGLSITPAHQTIGRSPISPAHSAHDLRMTTPDDDHSSIDLPFDGVNLSVGVSGVPYKSRPFSSSRTEHAFQDDLSEFGMIGQRSCPSRYKEPVDGIKIEPGTDCRTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -