Snob018318.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- -
- Assembly
- GCA_027564815.1
- Location
- JANTOP010003663.1:1-5141[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-18 6.2e-15 54.7 0.0 2 45 198 242 197 242 0.95 2 2 1.5 2.4e+03 -1.6 0.0 26 35 276 285 275 287 0.81
Sequence Information
- Coding Sequence
- GTGCAATGGACTGTAGTCGATTCAAACTATCCCCGGTTTGCGTTGTCGACATGCCAAACGGTGGGCGGAAATAACGGTGGCAGCAATAGCGGCACAGCGGGTAATGGTACCATGACACCGTCATCAATTGTAACGGCTCACGGACAAGAAAATCAACAACATCAACAGCATTCGACTGGATCAAATCAATCAGCAACTGGTACAACAAATCATTCAGCACAAATACAACAACAGTATGGTGGTTCGGCCTATTCGCCACAAATAATTAGTGTTAATCCAAATAGTTTAGTTAATAATTATACACAACAGCAGCAAAGTTTATCGACACCAACATCACCTCAAGCGACGGGAAACAATTTGGTGCAATCGGTGTATAGTCAAGGACCGACGCCAAATCAATCGCCCATTCAATTGGCTGCTGGTGGAAGTAATAATGGTCAAAGTAGCGGTGGGCAAGCTAGTGGAAGTAATAGCGGTACGGGTCAACAGGGTACGGCTAGTGGTAGTGGTGCAGGTACTGCCAGTGGTGGTAATGGATCTACTGGTACCGGTTCCGGTCACAAACGTAAACGTTCTGTTAATCCACAGGGAGATGAAAATTTTATTCGGGCCTTGGAAGCGGTACGCTTTGGAGGTATCGGTTTTTGTAAAGCGGCCCGTATTTATGGCGTCAACAATCGAACGCTTTGGTTGGAATATAAAAAACGTGGCTACCCAATAAGTCGACCGAGCATTAAAAGTCGCATTAAATTGGAACCAAATATGACACCGCCGCCATCCAGTACACCAAATAACGAAGAGAATACATCAATGGAAAATTATGAGCACAGCATCTCACAGACAACGTTAAATATGACCGTTCCTGCTCCGGCAGAAACTCCAGCATCTCTTATGTGTCCTCCGCATGCACATCCGATGGGTGTAATGAGCTTCTTGGACACACGGCACGTCGAATTTCATGCAATGCCACGCCAACGATTTTCAGATAGTGGAACGGTAAACGTTAATCCAACTGCCATGAATTTACAAGGTTTAAATTTCAATTAA
- Protein Sequence
- VQWTVVDSNYPRFALSTCQTVGGNNGGSNSGTAGNGTMTPSSIVTAHGQENQQHQQHSTGSNQSATGTTNHSAQIQQQYGGSAYSPQIISVNPNSLVNNYTQQQQSLSTPTSPQATGNNLVQSVYSQGPTPNQSPIQLAAGGSNNGQSSGGQASGSNSGTGQQGTASGSGAGTASGGNGSTGTGSGHKRKRSVNPQGDENFIRALEAVRFGGIGFCKAARIYGVNNRTLWLEYKKRGYPISRPSIKSRIKLEPNMTPPPSSTPNNEENTSMENYEHSISQTTLNMTVPAPAETPASLMCPPHAHPMGVMSFLDTRHVEFHAMPRQRFSDSGTVNVNPTAMNLQGLNFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -