Snob018848.1
Basic Information
- Insect
- Symmerus nobilis
- Gene Symbol
- lov
- Assembly
- GCA_027564815.1
- Location
- JANTOP010015040.1:1-4457[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-19 6.4e-16 57.9 0.0 1 44 19 62 19 63 0.96 2 2 4.5 7.3e+03 -3.1 0.1 11 19 166 174 165 174 0.82
Sequence Information
- Coding Sequence
- AGTCGACCAAAGGGACAACATTCAGCGCCACGTGGTGGACCTCCACGTTCATGGACAAATGCTGAATTAACAGAAGCATTACAACATGTATGGAATAAAAAGATGACAACTAGTCAAGCATCTCGAATATTTGGCATTCCCTACAATTCACTTTTAATGTATGTACGTGGAAAATATGGTAAAAGTTTAAAATTAGAACAACTCCGTAAAGATTGCATTAGTGGACCGCCAATTGAACTTCTAACTATGGGATTGAATTCACATAATAATAATAACAAAAATCTTAGTGATCATCGACATAAGGAGCTACGTGATTTGGAAAATTTACCAATGCCCCGAAGTGCGTCATCCGAGCCAGATTTATTATCAAGTGCAAATGCAATGTTTAATCCTTTTCCGCCAGGATTTTATACAGACTTTCCTGGAGGTTTTCCTGGTCTTCCATTAAGCATGTTAAATTTATTGCCACCGAATCGTCATCATTCTAGTGGGCAAAGTATTCTTCATGGTACAATGAGTGTTGTTGATGAAGACTGTAAAAGTGATAGATCAAAACAATCGCTCGAGGAAGAGCTACCAATGCAACTTGCGTTAACTCACGACCAGCGAAGAGATTTACTGCAACAAAACGGTCAGGATTGA
- Protein Sequence
- SRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPIELLTMGLNSHNNNNKNLSDHRHKELRDLENLPMPRSASSEPDLLSSANAMFNPFPPGFYTDFPGGFPGLPLSMLNLLPPNRHHSSGQSILHGTMSVVDEDCKSDRSKQSLEEELPMQLALTHDQRRDLLQQNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -